Your message dated Fri, 12 Aug 2022 18:00:11 +0000 with message-id <e1omyx9-000w4x...@fasolo.debian.org> and subject line Bug#1016645: fixed in metaphlan 3.1.0+renamed-1 has caused the Debian Bug report #1016645, regarding metaphlan2: package name and description can become confusing to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1016645: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016645 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: metaphlan2 Version: 3.0.14-1 Severity: wishlist Dear Maintainer, Version 2.0 is EOL since 2 years ago, cf.: https://github.com/biobakery/MetaPhlAn2 (see also https://huttenhower.sph.harvard.edu/metaphlan2/ that indicates to look for 3.0) With 3.0 the official name seems to me MetaPhlAn (without any attached number): https://github.com/biobakery/MetaPhlAn with the homepage: http://segatalab.cibio.unitn.it/tools/metaphlan/index.html (see also https://huttenhower.sph.harvard.edu/metaphlan) The current package version is already 3.0.14 and the package description is citing 2.0 in two places but the following one may become strange by the time, isn't it? <cut> MetaPhlAn 2.0 relies on ~1M unique clade-specific marker genes (the marker information file can be found at usr/share/metaphlan2/utils/markers_info.txt.bz2) identified from ~17,000 reference genomes (~13,500 bacterial and archaeal, ~3,500 viral, and ~110 eukaryotic), allowing <cut> In any case, many thanks for its maintenance. Cheers, Patrice -- System Information: Debian Release: bookworm/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 5.17.0-2-amd64 (SMP w/24 CPU threads; PREEMPT) Kernel taint flags: TAINT_FIRMWARE_WORKAROUND Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages metaphlan2 depends on: ii bowtie2 2.4.5-1 ii metaphlan2-data 2.6.0+ds-4 ii python3 3.10.5-3 ii python3-biom-format 2.1.12-1+b1 ii python3-biopython 1.79+dfsg-3+b1 ii python3-dendropy 4.5.2-1 ii python3-h5py-serial 3.7.0-2 ii python3-msgpack 1.0.3-1+b1 ii python3-numpy 1:1.21.5-1+b1 ii python3-pandas 1.3.5+dfsg-5 ii python3-pysam 0.17.0+ds-2+b2 ii python3-requests 2.27.1+dfsg-1 ii python3-scipy 1.8.1-8 metaphlan2 recommends no packages. metaphlan2 suggests no packages. -- no debconf information
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--- Begin Message ---Source: metaphlan Source-Version: 3.1.0+renamed-1 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of metaphlan, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1016...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated metaphlan package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Thu, 04 Aug 2022 17:18:25 +0200 Source: metaphlan Binary: metaphlan Architecture: source all Version: 3.1.0+renamed-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: metaphlan - Metagenomic Phylogenetic Analysis Closes: 1016645 Changes: metaphlan (3.1.0+renamed-1) unstable; urgency=medium . * d/watch: Create proper source tarball name * Rename package and source name from metaphlan2 to metaphlan Closes: #1016645 Checksums-Sha1: 7e745268803c6b2f67f6679fc95cacf4d0b41f3d 2106 metaphlan_3.1.0+renamed-1.dsc 53f0a171eee2064d0276d7b067b84b81f171ac2d 301169 metaphlan_3.1.0+renamed.orig.tar.gz 3ad33b5af6edcc4c81dbc2ef5cf73162262f704e 458132 metaphlan_3.1.0+renamed-1.debian.tar.xz d0072414762d2b10703d875e7d1e8d60e82ec8c5 706752 metaphlan_3.1.0+renamed-1_all.deb 82b7b681a79b06e4570b405850aaaac8244d2a13 7855 metaphlan_3.1.0+renamed-1_amd64.buildinfo Checksums-Sha256: 55bd56e63318b69159fd021ead970663a8b1e460e7a8dc809a0940d71cdce49c 2106 metaphlan_3.1.0+renamed-1.dsc 6525817e7a87e06c88356d503875ad898839c4e5b4b7c4efe47263a4efd05d50 301169 metaphlan_3.1.0+renamed.orig.tar.gz cf9ab89b4d38d14a28c8842f36bddcaf578a501ba865ec3253a21360c4b0b55b 458132 metaphlan_3.1.0+renamed-1.debian.tar.xz 67c425eedaf8cc23db6ff890fde64fbb5c75b3148837b68e8a6f66c7230438c0 706752 metaphlan_3.1.0+renamed-1_all.deb afa15e9775fa49f31fe39d74db88c9efd8555ddea38e9959a2836f3e5323ebaa 7855 metaphlan_3.1.0+renamed-1_amd64.buildinfo Files: 9076ba092a455a85bac7925e7017f1c3 2106 science optional metaphlan_3.1.0+renamed-1.dsc 3241bb9d6ddfa68847dfda8796f5c7d7 301169 science optional metaphlan_3.1.0+renamed.orig.tar.gz fbdd967d900b71eaf3c1d7b0c7fdb416 458132 science optional metaphlan_3.1.0+renamed-1.debian.tar.xz 06bc458a51bf8e5a13fc81d5ba10394c 706752 science optional metaphlan_3.1.0+renamed-1_all.deb e4e9d770ffd934ce67fc035afe0729fd 7855 science optional metaphlan_3.1.0+renamed-1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmLr46YRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEydw//a70c0bQC/N01uPANM2zDK5uooNk7rUtY zkwDJRQveVYy2QVZL8S+toj4ZFybkzWthNpUhIFCQAaAy+/NVbqm5DvhFJcDDkBk eV+/GxjL1+T/AedX15XAtKeoiiIiNWaEWHfJFZK2TB35MsjOpIjKoqlSD8oMStBv wgRTS2udmJ3N26pEIaG14ppcqHpQDFxZkmcNW4vi020TL0QxtBysBOOiW63dFfXn MDm/WfHdwP4/koOpRUJgJU3ZyByw8w25zt6MsyIhxjqJqsDtr+/LJ4fG+YPiLOnr +IrKdscMDPbBk50S5FBWVKY0wJ5ouvnwfVCzbruQSsblWHUS1tPX/rjVTaieG9hH OW3WVZNnpnZhj5kwMlnWYsPO3mQ8lf3dh6IzWfdPnu6v24a2HyucZ+6l/k/W71ZN C4x4raFEoGPSHC/XAySeGK4qTi3Xh4lMJA+LDYEkA/rUWT7mTuJi0FEllZZ2O2q8 YUzsd+NWT1U6uUz0netczO+J0wGy8ycq3qkc8MBtg4yPpPq9lIPuD/HvEhB7qzDO eDJG17R7QYXVd4punLxLSF1p5etRBqW1l7oIgSXxYx2Yq7rTLdp4BH1EMDigZidW aVnro/9rmzTsAH6VqUCLhp6JWU1Qi+zkbhONGjCexuTPIDCI82bJVQJbHTE1adYP +cTV3t6Dbs0= =dvKb -----END PGP SIGNATURE-----
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