Your message dated Mon, 04 Jul 2022 14:40:46 +0000 with message-id <e1o8nfm-0008ys...@fasolo.debian.org> and subject line Bug#1012906: fixed in libcifpp 2.0.5-3 has caused the Debian Bug report #1012906, regarding cif-tools: ftbfs with GCC-12 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1012906: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1012906 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:cif-tools Version: 1.0.1b-1 Severity: normal Tags: sid bookworm User: debian-...@lists.debian.org Usertags: ftbfs-gcc-12 [This bug is targeted to the upcoming bookworm release] Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-12/g++-12, but succeeds to build with gcc-11/g++-11. The severity of this report will be raised before the bookworm release. The full build log can be found at: http://qa-logs.debian.net/2022/06/09/gcc12/cif-tools_1.0.1b-1_unstable_gcc12.log The last lines of the build log are at the end of this report. To build with GCC 11, either set CC=gcc-11 CXX=g++-11 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-11/porting_to.html GCC 11 defaults to the GNU++17 standard. If your package installs header files in /usr/include, please don't work around C++17 issues by choosing a lower C++ standard for the package build, but fix these issues to build with the C++17 standard. [...] /usr/include/cif++/Cif++.hpp:576:81: error: ‘strcmp’ is not a member of ‘std’ 576 | return icase ? cif::icompare(ref.c_str(), value) : std::strcmp(ref.c_str(), value.c_str()); | ^~~~~~ [ 71%] Building CXX object CMakeFiles/mmCQL.dir/src/pr-main.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_RSRC -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/PRIVATE -I/<<PKGBUILDDIR>>/cifpp::cifpp -I/<<PKGBUILDDIR>>/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/mmCQL.dir/src/pr-main.cpp.o -MF CMakeFiles/mmCQL.dir/src/pr-main.cpp.o.d -o CMakeFiles/mmCQL.dir/src/pr-main.cpp.o -c /<<PKGBUILDDIR>>/src/pr-main.cpp [ 75%] Building CXX object CMakeFiles/cif2pdb.dir/src/pr-main.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_RSRC -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/PRIVATE -I/<<PKGBUILDDIR>>/cifpp::cifpp -I/<<PKGBUILDDIR>>/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/cif2pdb.dir/src/pr-main.cpp.o -MF CMakeFiles/cif2pdb.dir/src/pr-main.cpp.o.d -o CMakeFiles/cif2pdb.dir/src/pr-main.cpp.o -c /<<PKGBUILDDIR>>/src/pr-main.cpp make[3]: *** [CMakeFiles/cif-grep.dir/build.make:97: CMakeFiles/cif-grep.dir/src/pr-main.cpp.o] Error 1 make[3]: *** Waiting for unfinished jobs.... In file included from /<<PKGBUILDDIR>>/src/pr-main.cpp:39: /usr/include/cif++/Cif++.hpp: In static member function ‘static int cif::detail::ItemReference::item_value_as<char [N]>::compare(const cif::detail::ItemReference&, const char (&)[N], bool)’: /usr/include/cif++/Cif++.hpp:548:81: error: ‘strcmp’ is not a member of ‘std’ 548 | return icase ? cif::icompare(ref.c_str(), value) : std::strcmp(ref.c_str(), value); | ^~~~~~ /usr/include/cif++/Cif++.hpp: In static member function ‘static int cif::detail::ItemReference::item_value_as<const char*>::compare(const cif::detail::ItemReference&, const char*, bool)’: /usr/include/cif++/Cif++.hpp:562:81: error: ‘strcmp’ is not a member of ‘std’ 562 | return icase ? cif::icompare(ref.c_str(), value) : std::strcmp(ref.c_str(), value); | ^~~~~~ /usr/include/cif++/Cif++.hpp: In static member function ‘static int cif::detail::ItemReference::item_value_as<std::__cxx11::basic_string<char> >::compare(const cif::detail::ItemReference&, const std::string&, bool)’: /usr/include/cif++/Cif++.hpp:576:81: error: ‘strcmp’ is not a member of ‘std’ 576 | return icase ? cif::icompare(ref.c_str(), value) : std::strcmp(ref.c_str(), value.c_str()); | ^~~~~~ make[3]: *** [CMakeFiles/cif-diff.dir/build.make:97: CMakeFiles/cif-diff.dir/src/pr-main.cpp.o] Error 1 make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:908: CMakeFiles/cif-diff.dir/all] Error 2 make[3]: *** [CMakeFiles/pdb2cif.dir/build.make:97: CMakeFiles/pdb2cif.dir/src/pr-main.cpp.o] Error 1 make[3]: *** Waiting for unfinished jobs.... In file included from /<<PKGBUILDDIR>>/src/pr-main.cpp:39: /usr/include/cif++/Cif++.hpp: In static member function ‘static int cif::detail::ItemReference::item_value_as<char [N]>::compare(const cif::detail::ItemReference&, const char (&)[N], bool)’: /usr/include/cif++/Cif++.hpp:548:81: error: ‘strcmp’ is not a member of ‘std’ 548 | return icase ? cif::icompare(ref.c_str(), value) : std::strcmp(ref.c_str(), value); | ^~~~~~ /usr/include/cif++/Cif++.hpp: In static member function ‘static int cif::detail::ItemReference::item_value_as<const char*>::compare(const cif::detail::ItemReference&, const char*, bool)’: /usr/include/cif++/Cif++.hpp:562:81: error: ‘strcmp’ is not a member of ‘std’ 562 | return icase ? cif::icompare(ref.c_str(), value) : std::strcmp(ref.c_str(), value); | ^~~~~~ /usr/include/cif++/Cif++.hpp: In static member function ‘static int cif::detail::ItemReference::item_value_as<std::__cxx11::basic_string<char> >::compare(const cif::detail::ItemReference&, const std::string&, bool)’: /usr/include/cif++/Cif++.hpp:576:81: error: ‘strcmp’ is not a member of ‘std’ 576 | return icase ? cif::icompare(ref.c_str(), value) : std::strcmp(ref.c_str(), value.c_str()); | ^~~~~~ In file included from /<<PKGBUILDDIR>>/src/pr-main.cpp:39: /usr/include/cif++/Cif++.hpp: In static member function ‘static int cif::detail::ItemReference::item_value_as<char [N]>::compare(const cif::detail::ItemReference&, const char (&)[N], bool)’: /usr/include/cif++/Cif++.hpp:548:81: error: ‘strcmp’ is not a member of ‘std’ 548 | return icase ? cif::icompare(ref.c_str(), value) : std::strcmp(ref.c_str(), value); | ^~~~~~ /usr/include/cif++/Cif++.hpp: In static member function ‘static int cif::detail::ItemReference::item_value_as<const char*>::compare(const cif::detail::ItemReference&, const char*, bool)’: /usr/include/cif++/Cif++.hpp:562:81: error: ‘strcmp’ is not a member of ‘std’ 562 | return icase ? cif::icompare(ref.c_str(), value) : std::strcmp(ref.c_str(), value); | ^~~~~~ /usr/include/cif++/Cif++.hpp: In static member function ‘static int cif::detail::ItemReference::item_value_as<std::__cxx11::basic_string<char> >::compare(const cif::detail::ItemReference&, const std::string&, bool)’: /usr/include/cif++/Cif++.hpp:576:81: error: ‘strcmp’ is not a member of ‘std’ 576 | return icase ? cif::icompare(ref.c_str(), value) : std::strcmp(ref.c_str(), value.c_str()); | ^~~~~~ make[3]: *** [CMakeFiles/cif2pdb.dir/build.make:97: CMakeFiles/cif2pdb.dir/src/pr-main.cpp.o] Error 1 make[3]: *** Waiting for unfinished jobs.... make[3]: *** [CMakeFiles/mmCQL.dir/build.make:97: CMakeFiles/mmCQL.dir/src/pr-main.cpp.o] Error 1 make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:1038: CMakeFiles/mmCQL.dir/all] Error 2 make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:882: CMakeFiles/cif2pdb.dir/all] Error 2 make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:960: CMakeFiles/cif-grep.dir/all] Error 2 make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:856: CMakeFiles/pdb2cif.dir/all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[1]: *** [Makefile:149: all] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2 make: *** [debian/rules:6: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
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--- Begin Message ---Source: libcifpp Source-Version: 2.0.5-3 Done: Maarten L. Hekkelman <maar...@hekkelman.com> We believe that the bug you reported is fixed in the latest version of libcifpp, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1012...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Maarten L. Hekkelman <maar...@hekkelman.com> (supplier of updated libcifpp package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Mon, 04 Jul 2022 16:25:14 +0200 Source: libcifpp Architecture: source Version: 2.0.5-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Maarten L. Hekkelman <maar...@hekkelman.com> Closes: 1012906 Changes: libcifpp (2.0.5-3) unstable; urgency=medium . * Version 2.0.5-2 contained an error in the closes section. Closes: #1012906 Checksums-Sha1: b63d66962b14db0bfe56d8c680db3ac82e4a7719 2383 libcifpp_2.0.5-3.dsc d291f610046bc4d8fa1fbd6725e39b9fdb59a5f4 9688 libcifpp_2.0.5-3.debian.tar.xz 83bb544e671310d9fad2153ecba527a97bad23be 8341 libcifpp_2.0.5-3_amd64.buildinfo Checksums-Sha256: aaad8ed4c9ec5624aecea3552a8933304908653912a10daf9344130e4289a716 2383 libcifpp_2.0.5-3.dsc d61e0b69ec0e247fb1434ca42e906515bc5c706f98316c5a646b3dee97f4c20f 9688 libcifpp_2.0.5-3.debian.tar.xz 99d5eeb987847d577c6db1773c2ddea5b9056e8adc4e588d87c286196e1c12e2 8341 libcifpp_2.0.5-3_amd64.buildinfo Files: 4c0da390435822ef241103ab883a2f4a 2383 libs optional libcifpp_2.0.5-3.dsc b5221f4ae7a63065228239f4e75d6e73 9688 libs optional libcifpp_2.0.5-3.debian.tar.xz ffa45a114862081aaf7eac0ee0a2ae3d 8341 libs optional libcifpp_2.0.5-3_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJKBAEBCgA0FiEEpytoJCJrtAfiS56AWHUD7Hrn7c4FAmLC+QEWHG1hYXJ0ZW5A aGVra2VsbWFuLmNvbQAKCRBYdQPseuftzqjAD/0V5XPddg8eASB8Z64ckW19uJS6 MuEwkeStV9Ur1mSyHD4iYcTB9QKBmPW/gXMyueB2u0Wi636E26V/WeJSQE9uZG1g 0paF7nrJw5gNFlr0zRVGWvWLqFloTPZouZ5AmRpe0S3YBKmszIJOgLj10oFhCxWZ Dcz5TPxUryA30jV9LOVfaajN+W2oiEKP0ZHLUONwCv2qUo/quKMmN4K8QsOQdmX4 wbvRQm81XQ+evdOWPuuGpXEhdaDYMCCi921q8Jt4cwbVKImKMqDJ97Z5a68RdLru HcxHZPTl1GnYWw+dJkaEQt+RyME/iemNKBnseIiVuRgRCvCOugNAlxnmPbFp0SSv YDT/kwMPjd8VpRtesjdhzAf//NjGwQ55TuE9+zggPeiuhkUaFYTtPoty5yejZcqW vJJKqvADcfUGjtVR3zNK+UNQ3g4gw8w/HYF/MKp+XcF4C7Uiy6NIRBqgb4q9pvNz aTrU2uVt62OGfkhWtT1T8uRZWtJkJswWXCMd+u7k3wRbamJ9NdHzi+IrEPjkCRiE IMAlxiuK4iMHXpuxv2AlUnlcSuO6DB3Duxda0OcaL6XqFeCCZSf4MpT4CLQVN009 jO+txO9hPQuUhIDUXDqs0fkZSEBKU+D6PIjDNmNDux+VDqYWIDym3fUitEWSBJDw fdCjrN/x7zLklyM9dg== =g6pg -----END PGP SIGNATURE-----
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