Your message dated Thu, 13 May 2010 03:33:33 +0000
with message-id <e1ocpaz-0008pt...@ries.debian.org>
and subject line Bug#581237: fixed in r-base 2.11.0-2
has caused the Debian Bug report #581237,
regarding /usr/lib/R/lib/lib{Rblas, Rlapack}.so are built only on armel. Still
intentional?
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
581237: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=581237
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: r-base
Version: 2.11.0-1
Severity: normal
Hello,
I stumbled upon this issue while analizing kdeedu FTBFS [1] on armel. It is
caused by likely buggy kdeedu buildsystem settings when
/usr/lib/R/lib/libRlapack.so is present. So it is not the fault of the
r-base-core package directly.
But this issue left me wondering why armel is the *only* architecture which
still builds /usr/lib/R/lib/lib{Rblas,Rlapack}.so:
$ wget -O amd64_filelist
http://packages.debian.org/sid/amd64/r-base-core/filelist
$ wget -O armel_filelist
http://packages.debian.org/sid/armel/r-base-core/filelist
<strip irrelevant html and text from both>
$ diff -u amd64_filelist armel_filelist
--- amd64_filelist 2010-05-12 00:03:42.000000000 +0300
+++ armel_filelist 2010-05-12 00:04:00.000000000 +0300
@@ -45,6 +45,8 @@
/usr/lib/R/etc/ldpaths
/usr/lib/R/etc/repositories
/usr/lib/R/lib/libR.so
+/usr/lib/R/lib/libRblas.so
+/usr/lib/R/lib/libRlapack.so
/usr/lib/R/library/R.css
/usr/lib/R/library/base/CITATION
/usr/lib/R/library/base/DESCRIPTION
Then I saw this old code in debian/rules:
# edd 14 Nov 2003 turn blas off on arm
ifeq ($(arch),arm)
atlas = --without-blas
endif
As far as I can tell, --without-blas disables detection of system blas at
configure stage. But libblas-dev build dependency is NOT arch specific (or it
should be [!armel]). What is more, there is also the following at m4/R.m4:2894
# We cannot use LAPACK if BLAS is not found
if test "x${acx_blas_ok}" != xyes; then
acx_lapack_ok=noblas
fi
So system lapack cannot be used if system blas is not used yet --with-lapack is
passed to configure on armel by debian/rules. And again, liblapack-dev build
dependency is NOT architecture specific.
So my question is if that --without-blas is still intentional nowadays. I would
appretiate quick answer or upload because kdeedu is part of ongoing KDE SC
4.4.3 transition. Initial 10 days is about to expire for majority of other KDE
SC packages.
If /usr/lib/R/lib/libRlapack.so is intentional on armel, I will have to fix
kdeedu build system and if it is not, I could wait a bit until fixed r-base is
uploaded to sid and request a give back.
1.
https://buildd.debian.org/fetch.cgi?&pkg=kdeedu&ver=4%3A4.4.3-1&arch=armel&stamp=1273585548&file=log
-- System Information:
Debian Release: squeeze/sid
APT prefers unstable
APT policy: (500, 'unstable'), (500, 'testing'), (101, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 2.6.33-2-amd64 (SMP w/1 CPU core)
Locale: LANG=lt_LT.UTF-8, LC_CTYPE=lt_LT.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
--- End Message ---
--- Begin Message ---
Source: r-base
Source-Version: 2.11.0-2
We believe that the bug you reported is fixed in the latest version of
r-base, which is due to be installed in the Debian FTP archive:
r-base-core-dbg_2.11.0-2_i386.deb
to main/r/r-base/r-base-core-dbg_2.11.0-2_i386.deb
r-base-core_2.11.0-2_i386.deb
to main/r/r-base/r-base-core_2.11.0-2_i386.deb
r-base-dev_2.11.0-2_all.deb
to main/r/r-base/r-base-dev_2.11.0-2_all.deb
r-base-html_2.11.0-2_all.deb
to main/r/r-base/r-base-html_2.11.0-2_all.deb
r-base_2.11.0-2.diff.gz
to main/r/r-base/r-base_2.11.0-2.diff.gz
r-base_2.11.0-2.dsc
to main/r/r-base/r-base_2.11.0-2.dsc
r-base_2.11.0-2_all.deb
to main/r/r-base/r-base_2.11.0-2_all.deb
r-doc-html_2.11.0-2_all.deb
to main/r/r-base/r-doc-html_2.11.0-2_all.deb
r-doc-info_2.11.0-2_all.deb
to main/r/r-base/r-doc-info_2.11.0-2_all.deb
r-doc-pdf_2.11.0-2_all.deb
to main/r/r-base/r-doc-pdf_2.11.0-2_all.deb
r-mathlib_2.11.0-2_i386.deb
to main/r/r-base/r-mathlib_2.11.0-2_i386.deb
r-recommended_2.11.0-2_all.deb
to main/r/r-base/r-recommended_2.11.0-2_all.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 581...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Dirk Eddelbuettel <e...@debian.org> (supplier of updated r-base package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Wed, 12 May 2010 21:25:38 -0500
Source: r-base
Binary: r-base r-base-core r-base-dev r-mathlib r-base-html r-doc-pdf
r-doc-html r-doc-info r-recommended r-base-core-dbg
Architecture: source i386 all
Version: 2.11.0-2
Distribution: unstable
Urgency: low
Maintainer: Dirk Eddelbuettel <e...@debian.org>
Changed-By: Dirk Eddelbuettel <e...@debian.org>
Description:
r-base - GNU R statistical computation and graphics system
r-base-core - GNU R core of statistical computation and graphics system
r-base-core-dbg - GNU R debug symbols for statistical comp. language and
environmen
r-base-dev - GNU R installation of auxiliary GNU R packages
r-base-html - GNU R html docs for statistical computing system functions
r-doc-html - GNU R html manuals for statistical computing system
r-doc-info - GNU R info manuals statistical computing system
r-doc-pdf - GNU R pdf manuals for statistical computing system
r-mathlib - GNU R standalone mathematics library
r-recommended - GNU R collection of recommended packages [metapackage]
Closes: 581237
Changes:
r-base (2.11.0-2) unstable; urgency=low
.
* debian/rules: Withdraw old hack to let armel build without system blas
and lapack as these now work. With special thanks to Modestas Vainius
for spotting this and testing the fix. (Closes: #581237)
.
* debian/rules: Also withdraw setting of radical -O0 -g0 on armel
which was once needed due to poor Fortran compiler performance.
Once again thanks to Modestas Vainius for spotting and checking!
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