Your message dated Mon, 03 May 2010 07:50:47 +0000 with message-id <e1o8qqr-0001fu...@ries.debian.org> and subject line Bug#579578: fixed in petsc 3.1.dfsg-1 has caused the Debian Bug report #579578, regarding libpetsc3.0.0-dev: Out of date -llapackgf-3 and -lblas-3gf in makefiles to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 579578: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=579578 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: libpetsc3.0.0-dev Version: 3.0.0.dfsg-6 Severity: normal Tags: sid The makefiles in the petsc installation refer to -llapackgf-3 and -lblas-3gf that no longer exist in the alternatives system for libblas.so.3gf and liblapack.so.3gf. This means when using the petsc makefiles in the recommended way, i.e. including ${PETSC_DIR}/conf/variables and ${PETSC_DIR}/conf/rules, the binary will fail to link against petsc. >From the command-line: $ make -f /usr/lib/petscdir/3.0.0/conf/base getlinklibs -L/usr/lib/petscdir/3.0.0//linux-gnu-c-opt/lib -L/usr/lib/petscdir/3.0.0 //linux-gnu-c-opt/lib -L/usr/lib/petscdir/3.0.0//linux-gnu-c-opt/lib -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lX11 -L/usr/lib -lHYPRE -lmpi_cxx -lstdc++ -lsuperlu -lscotch -lspooles -lumfpack -lamd -llapackgf-3 -lblas-3gf -L/usr/lib/openmpi/lib -L/usr/lib/gcc/i486-linux- gnu/4.4.2 -ldl -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -lmpi_f90 -lmpi_f77 -lgfortranbegin -lgfortran -lm -lm -L/usr/lib/gcc/i486 -linux-gnu -lm -lm -lmpi_cxx -lstdc++ -lmpi_cxx -lstdc++ -ldl -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -ldl which contains -llapackgf-3 and -lblas-3gf. -- System Information: Debian Release: squeeze/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: i386 (i686) Kernel: Linux 2.6.32-2-686 (SMP w/2 CPU cores) Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/bash Versions of packages libpetsc3.0.0-dev depends on: ii gfortran 4:4.4.3-1 The GNU Fortran 95 compiler ii libatlas-base-dev [liblap 3.6.0-24 Automatically Tuned Linear Algebra ii libblas-dev [libblas-3gf. 1.2-7 Basic Linear Algebra Subroutines 3 ii libhypre-dev 2.4.0b-6 High Performance Matrix Preconditi ii liblapack-dev [liblapack- 3.2.1-8 library of linear algebra routines ii libopenmpi-dev 1.3.2-4 high performance message passing l ii libpetsc3.0.0 3.0.0.dfsg-6 Shared libraries for version 3.0.0 ii libscotch-dev 5.1.7.dfsg-5 programs and libraries for graph, ii libspooles-dev 2.2-6+b1 SPOOLES SParse Object Oriented Lin ii libsuitesparse-dev 1:3.2.0-4 libraries for sparse matrices comp ii libsuperlu3-dev 3.0+20070106-3 Direct solution of large, sparse s ii libx11-dev 2:1.3.3-3 X11 client-side library (developme libpetsc3.0.0-dev recommends no packages. Versions of packages libpetsc3.0.0-dev suggests: pn libluminate-dev <none> (no description available) ii libpetsc3.0.0-dbg 3.0.0.dfsg-6 Static debugging libraries for PET ii petsc-dev 3.0.0.dfsg-6 Empty package depending on latest ii petsc3.0.0-doc 3.0.0.dfsg-6 Documentation and examples for PET -- no debconf information
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--- Begin Message ---Source: petsc Source-Version: 3.1.dfsg-1 We believe that the bug you reported is fixed in the latest version of petsc, which is due to be installed in the Debian FTP archive: libpetsc3.1-dbg_3.1.dfsg-1_amd64.deb to main/p/petsc/libpetsc3.1-dbg_3.1.dfsg-1_amd64.deb libpetsc3.1-dev_3.1.dfsg-1_amd64.deb to main/p/petsc/libpetsc3.1-dev_3.1.dfsg-1_amd64.deb libpetsc3.1_3.1.dfsg-1_amd64.deb to main/p/petsc/libpetsc3.1_3.1.dfsg-1_amd64.deb petsc-dev_3.1.dfsg-1_all.deb to main/p/petsc/petsc-dev_3.1.dfsg-1_all.deb petsc3.1-doc_3.1.dfsg-1_all.deb to main/p/petsc/petsc3.1-doc_3.1.dfsg-1_all.deb petsc_3.1.dfsg-1.debian.tar.gz to main/p/petsc/petsc_3.1.dfsg-1.debian.tar.gz petsc_3.1.dfsg-1.dsc to main/p/petsc/petsc_3.1.dfsg-1.dsc petsc_3.1.dfsg.orig.tar.gz to main/p/petsc/petsc_3.1.dfsg.orig.tar.gz A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 579...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Adam C. Powell, IV <hazel...@debian.org> (supplier of updated petsc package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.8 Date: Fri, 30 Apr 2010 19:08:52 -0400 Source: petsc Binary: libpetsc3.1-dev petsc-dev libpetsc3.1 libpetsc3.1-dbg petsc3.1-doc Architecture: source all amd64 Version: 3.1.dfsg-1 Distribution: unstable Urgency: low Maintainer: Debian Scientific Computing Team <pkg-scicomp-de...@lists.alioth.debian.org> Changed-By: Adam C. Powell, IV <hazel...@debian.org> Description: libpetsc3.1 - Shared libraries for version 3.1 of PETSc libpetsc3.1-dbg - Static debugging libraries for PETSc libpetsc3.1-dev - Static libraries, shared links, header files for PETSc petsc-dev - Meta-package depending on latest PETSc development package petsc3.1-doc - Documentation and examples for PETSc Closes: 566920 576023 576799 577875 579578 Changes: petsc (3.1.dfsg-1) unstable; urgency=low . * New upstream release, patch level 1 (closes: #576023). * Removed bin/win32fe/win32fe.exe and win32feutils.dll, docs/manual.pdf and src/tops/twopager.pdf from upstream due to lack of source. * Changed BLAS and LAPACK links to -lblas and -llapack (closes: #577875). * PETSc brings this into -dev package config files (closes: #579578). * Added --with-clanguage=C++ to configure commands (closes: #576799). * Added HDF5 support (closes: #566920). * Changed to source format 3.0 (quilt). * Bumped Standards-Version. * Added ${misc:Depends} to all package Depends fields. * Disabled SuperLU because this PETSc version doesn't seem compatible. 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