I've run into problems with shell scripts hanging during execution for no 
apparent reason.  I've narrowed down my test case to two simple shell scripts.  
To reproduce the problem, I ran three instances of the "top.sh" script included 
here, and after a bit (30 minutes to an hour or so) I'll see that one or two of 
the shells have just stopped in their tracks.

Here are the scripts:

----<top.sh>----
dir=$1
loops=$2

for loop in `seq 1 $loops`
do
        x=`./subtest.sh $dir`
        date
        echo loop $loop
done

----<subtest.sh>----
for j in `ls $1`
do
        if [ `echo $j | egrep -i "A|B" | wc -l` -ne 0 ]
        then
                echo $j
        fi
done
echo subtest1 done >&2

--------

I then ran three bash shells.  The commands I ran, simultaneously, were:

1) ./top.sh C:/ 600
2) ./top.sh C:/windows 300
3) ./top.sh C:/windows/system32 100

These ran for about 45 minutes, and then I noticed that two of them (1 and 2 
above) had stopped printing any output.  The third was still moving along.  The 
third completed, but the first two never progressed any further.  I used 
Process Explorer from ntinternals.com, and saw that the two hung shells were 
not using any CPU, and did not have any child processes created; they were 
simply stopped.  If a process dump would be helpful, I can generate one with 
Windbg or gdb.


Here's my cygcheck output:

Cygwin Configuration Diagnostics
Current System Time: Wed Feb 01 15:07:43 2006

Windows 2003 Server Ver 5.2 Build 3790 Service Pack 1

Path:   C:\WINDOWS\system32
        C:\WINDOWS
        C:\WINDOWS\System32\Wbem
        C:\Program Files\Microsoft SQL Server\80\Tools\BINN
        C:\Program Files\SUperior SU

Output from C:\cygwin\bin\id.exe (nontsec)
UID: 500(Administrator) GID: 513(None)
0(root)                 513(None)               544(Administrators)
545(Users)

Output from C:\cygwin\bin\id.exe (ntsec)
UID: 500(Administrator) GID: 513(None)
0(root)                 513(None)               544(Administrators)
545(Users)

SysDir: C:\WINDOWS\system32
WinDir: C:\Documents and Settings\Administrator\WINDOWS

Here's some environment variables that may affect cygwin:
PWD = '/usr/bin'
HOME = '/home/Administrator'

Here's the rest of your environment variables:
HOMEPATH = '\Documents and Settings\Administrator'
APPDATA = 'C:\Documents and Settings\Administrator\Application Data'
TERM = 'cygwin'
PROCESSOR_IDENTIFIER = 'x86 Family 15 Model 2 Stepping 7, GenuineIntel'
WINDIR = 'C:\WINDOWS'
TMPDIR = '/cygdrive/c/Documents and Settings/Administrator/Local Settings/Temp'
USERDOMAIN = 'EAGLE'
OS = 'Windows_NT'
ALLUSERSPROFILE = 'C:\Documents and Settings\All Users'
TEMP = '/cygdrive/c/DOCUME~1/ADMINI~1/LOCALS~1/Temp'
COMMONPROGRAMFILES = 'C:\Program Files\Common Files'
USERNAME = 'Administrator'
CLUSTERLOG = 'C:\WINDOWS\Cluster\cluster.log'
PROCESSOR_LEVEL = '15'
FP_NO_HOST_CHECK = 'NO'
SYSTEMDRIVE = 'C:'
USERPROFILE = 'C:\Documents and Settings\Administrator'
LOGONSERVER = '\\EAGLE'
PROCESSOR_ARCHITECTURE = 'x86'
!C: = 'C:\cygwin\bin'
EXTMIRRBASE = 'C:\LKDR'
SHLVL = '1'
PATHEXT = '.COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH'
HOMEDRIVE = 'C:'
PROMPT = '$P$G'
COMSPEC = 'C:\WINDOWS\system32\cmd.exe'
TMP = '/cygdrive/c/DOCUME~1/ADMINI~1/LOCALS~1/Temp'
SYSTEMROOT = 'C:\WINDOWS'
PROCESSOR_REVISION = '0207'
PROGRAMFILES = 'C:\Program Files'
NUMBER_OF_PROCESSORS = '2'
SESSIONNAME = 'Console'
COMPUTERNAME = 'EAGLE'
!EXITCODE = '00000001'
_ = './cygcheck'
POSIXLY_CORRECT = '1'

Scanning registry for keys with 'Cygnus' in them...
HKEY_CURRENT_USER\Software\Cygnus Solutions
HKEY_CURRENT_USER\Software\Cygnus Solutions\Cygwin
HKEY_CURRENT_USER\Software\Cygnus Solutions\Cygwin\mounts v2
HKEY_CURRENT_USER\Software\Cygnus Solutions\Cygwin\Program Options
HKEY_CURRENT_USER\Software\SteelEye\LifeKeeper\Cygnus Solutions
HKEY_CURRENT_USER\Software\SteelEye\LifeKeeper\Cygnus Solutions\Cygwin
HKEY_CURRENT_USER\Software\SteelEye\LifeKeeper\Cygnus Solutions\Cygwin\mounts v2
HKEY_CURRENT_USER\Software\SteelEye\LifeKeeper\Cygnus Solutions\Cygwin\Program 
Options
HKEY_LOCAL_MACHINE\SOFTWARE\Cygnus Solutions
HKEY_LOCAL_MACHINE\SOFTWARE\Cygnus Solutions\Cygwin
HKEY_LOCAL_MACHINE\SOFTWARE\Cygnus Solutions\Cygwin\mounts v2
  (default) = '/cygdrive'
  cygdrive flags = 0x00000022
HKEY_LOCAL_MACHINE\SOFTWARE\Cygnus Solutions\Cygwin\mounts v2\/
  (default) = 'C:\cygwin'
  flags = 0x0000000a
HKEY_LOCAL_MACHINE\SOFTWARE\Cygnus Solutions\Cygwin\mounts v2\/usr/bin
  (default) = 'C:\cygwin/bin'
  flags = 0x0000000a
HKEY_LOCAL_MACHINE\SOFTWARE\Cygnus Solutions\Cygwin\mounts v2\/usr/lib
  (default) = 'C:\cygwin/lib'
  flags = 0x0000000a
HKEY_LOCAL_MACHINE\SOFTWARE\Cygnus Solutions\Cygwin\Program Options
HKEY_LOCAL_MACHINE\SOFTWARE\SteelEye\LifeKeeper\Cygnus Solutions
HKEY_LOCAL_MACHINE\SOFTWARE\SteelEye\LifeKeeper\Cygnus Solutions\Cygwin
HKEY_LOCAL_MACHINE\SOFTWARE\SteelEye\LifeKeeper\Cygnus Solutions\Cygwin\mounts 
v2
  (default) = '/cygdrive'
  cygdrive flags = 0x00000022
HKEY_LOCAL_MACHINE\SOFTWARE\SteelEye\LifeKeeper\Cygnus Solutions\Cygwin\mounts 
v2\/
  (default) = 0x0000000a
  native = 'C:\LK\cygwin'
HKEY_LOCAL_MACHINE\SOFTWARE\SteelEye\LifeKeeper\Cygnus Solutions\Cygwin\mounts 
v2\/bin
  (default) = 0x0000000a
  native = 'C:\LK\bin'
HKEY_LOCAL_MACHINE\SOFTWARE\SteelEye\LifeKeeper\Cygnus Solutions\Cygwin\mounts 
v2\/usr/bin
  (default) = 0x0000000a
  native = 'C:\LK\bin'
HKEY_LOCAL_MACHINE\SOFTWARE\SteelEye\LifeKeeper\Cygnus Solutions\Cygwin\mounts 
v2\/usr/lib
  (default) = 0x0000000a
  native = 'C:\LK\cygwin\lib'
HKEY_LOCAL_MACHINE\SOFTWARE\SteelEye\LifeKeeper\Cygnus Solutions\Cygwin\Program 
Options

Listing available drives...
Drv Type          Size   Used Flags              Name
a:  fd             N/A    N/A                    
c:  hd  NTFS      8189Mb  79% CP CS UN PA FC     
j:  cd             N/A    N/A                    
k:  hd             N/A    N/A                    
m:  hd             N/A    N/A                    
q:  hd             N/A    N/A                    
r:  hd             N/A    N/A                    
s:  hd             N/A    N/A                    
t:  hd             N/A    N/A                    
u:  hd             N/A    N/A                    
v:  hd             N/A    N/A                    
w:  hd             N/A    N/A                    
x:  hd             N/A    N/A                    
y:  hd             N/A    N/A                    
z:  hd             N/A    N/A                    

fd = floppy,          hd = hard drive,       cd = CD-ROM
net= Network Share,   ram= RAM drive,        unk= Unknown
CP = Case Preserving, CS = Case Sensitive,   UN = Unicode
PA = Persistent ACLS, FC = File Compression, VC = Volume Compression

Mount entries: these map POSIX directories to your NT drives.
-NT-           -POSIX-    -Type-  -Flags-
C:\cygwin      /          system  binmode
C:\cygwin/bin  /usr/bin   system  binmode
C:\cygwin/lib  /usr/lib   system  binmode
.              /cygdrive  system  binmode,cygdrive

Looking to see where common programs can be found, if at all...
Not Found: awk
Not Found: bash
Not Found: cat
Not Found: cp
Not Found: cpp (good!)
Not Found: crontab
Not Found: find
Not Found: gcc
Not Found: gdb
Not Found: grep
Not Found: kill
Not Found: ld
Not Found: ls
Not Found: make
Not Found: mv
Not Found: patch
Not Found: perl
Not Found: rm
Not Found: sed
Not Found: ssh
Not Found: sh
Not Found: tar
Not Found: test
Not Found: vi
Not Found: vim

Looking for various Cygwin DLLs...  (-v gives version info)
   56k 2005/07/09 C:\cygwin\bin\cygbz2-1.dll - os=4.0 img=1.0 sys=4.0
                  "cygbz2-1.dll" v0.0 ts=2005/7/9 1:09
    7k 2005/11/20 C:\cygwin\bin\cygcharset-1.dll - os=4.0 img=1.0 sys=4.0
                  "cygcharset-1.dll" v0.0 ts=2005/11/19 21:24
    7k 2003/10/19 C:\cygwin\bin\cygcrypt-0.dll - os=4.0 img=1.0 sys=4.0
                  "cygcrypt-0.dll" v0.0 ts=2003/10/19 3:57
   40k 2005/09/29 C:\cygwin\bin\cygform-8.dll - os=4.0 img=1.0 sys=4.0
                  "cygform-8.dll" v0.0 ts=2005/9/28 22:15
   45k 2001/04/25 C:\cygwin\bin\cygform5.dll - os=4.0 img=1.0 sys=4.0
                  "cygform5.dll" v0.0 ts=2001/4/25 1:28
   35k 2002/01/09 C:\cygwin\bin\cygform6.dll - os=4.0 img=1.0 sys=4.0
                  "cygform6.dll" v0.0 ts=2002/1/9 1:03
   48k 2003/08/09 C:\cygwin\bin\cygform7.dll - os=4.0 img=1.0 sys=4.0
                  "cygform7.dll" v0.0 ts=2003/8/9 5:25
   28k 2003/07/20 C:\cygwin\bin\cyggdbm-3.dll - os=4.0 img=1.0 sys=4.0
                  "cyggdbm-3.dll" v0.0 ts=2003/7/20 3:58
   30k 2003/08/11 C:\cygwin\bin\cyggdbm-4.dll - os=4.0 img=1.0 sys=4.0
                  "cyggdbm-4.dll" v0.0 ts=2003/8/10 22:12
   19k 2003/03/22 C:\cygwin\bin\cyggdbm.dll - os=4.0 img=1.0 sys=4.0
                  "cyggdbm.dll" v0.0 ts=2002/2/19 22:05
   15k 2003/07/20 C:\cygwin\bin\cyggdbm_compat-3.dll - os=4.0 img=1.0 sys=4.0
                  "cyggdbm_compat-3.dll" v0.0 ts=2003/7/20 4:00
   15k 2003/08/11 C:\cygwin\bin\cyggdbm_compat-4.dll - os=4.0 img=1.0 sys=4.0
                  "cyggdbm_compat-4.dll" v0.0 ts=2003/8/10 22:13
   17k 2001/06/28 C:\cygwin\bin\cyghistory4.dll - os=4.0 img=1.0 sys=4.0
                  "cyghistory4.dll" v0.0 ts=2001/1/6 23:34
   29k 2003/08/10 C:\cygwin\bin\cyghistory5.dll - os=4.0 img=1.0 sys=4.0
                  "cyghistory5.dll" v0.0 ts=2003/8/10 19:16
   24k 2006/01/28 C:\cygwin\bin\cyghistory6.dll - os=4.0 img=1.0 sys=4.0
                  "cyghistory6.dll" v0.0 ts=2006/1/27 22:06
  947k 2005/11/20 C:\cygwin\bin\cygiconv-2.dll - os=4.0 img=1.0 sys=4.0
                  "cygiconv-2.dll" v0.0 ts=2005/11/19 21:24
   22k 2001/12/13 C:\cygwin\bin\cygintl-1.dll - os=4.0 img=1.0 sys=4.0
                  "cygintl-1.dll" v0.0 ts=2001/12/13 4:28
   37k 2003/08/10 C:\cygwin\bin\cygintl-2.dll - os=4.0 img=1.0 sys=4.0
                  "cygintl-2.dll" v0.0 ts=2003/8/10 17:50
   31k 2005/11/20 C:\cygwin\bin\cygintl-3.dll - os=4.0 img=1.0 sys=4.0
                  "cygintl-3.dll" v0.0 ts=2005/11/19 21:04
   21k 2001/06/20 C:\cygwin\bin\cygintl.dll - os=4.0 img=1.0 sys=4.0
                  "cygintl.dll" v0.0 ts=2001/6/20 13:09
   21k 2005/09/29 C:\cygwin\bin\cygmenu-8.dll - os=4.0 img=1.0 sys=4.0
                  "cygmenu-8.dll" v0.0 ts=2005/9/28 22:15
   26k 2001/04/25 C:\cygwin\bin\cygmenu5.dll - os=4.0 img=1.0 sys=4.0
                  "cygmenu5.dll" v0.0 ts=2001/4/25 1:27
   20k 2002/01/09 C:\cygwin\bin\cygmenu6.dll - os=4.0 img=1.0 sys=4.0
                  "cygmenu6.dll" v0.0 ts=2002/1/9 1:03
   29k 2003/08/09 C:\cygwin\bin\cygmenu7.dll - os=4.0 img=1.0 sys=4.0
                  "cygmenu7.dll" v0.0 ts=2003/8/9 5:25
   67k 2005/09/29 C:\cygwin\bin\cygncurses++-8.dll - os=4.0 img=1.0 sys=4.0
                  "cygncurses++-8.dll" v0.0 ts=2005/9/28 22:16
  156k 2001/04/25 C:\cygwin\bin\cygncurses++5.dll - os=4.0 img=1.0 sys=4.0
                  "cygncurses++5.dll" v0.0 ts=2001/4/25 1:29
  175k 2002/01/09 C:\cygwin\bin\cygncurses++6.dll - os=4.0 img=1.0 sys=4.0
                  "cygncurses++6.dll" v0.0 ts=2002/1/9 1:03
  226k 2005/09/29 C:\cygwin\bin\cygncurses-8.dll - os=4.0 img=1.0 sys=4.0
                  "cygncurses-8.dll" v0.0 ts=2005/9/28 22:02
  226k 2001/04/25 C:\cygwin\bin\cygncurses5.dll - os=4.0 img=1.0 sys=4.0
                  "cygncurses5.dll" v0.0 ts=2001/4/25 1:17
  202k 2002/01/09 C:\cygwin\bin\cygncurses6.dll - os=4.0 img=1.0 sys=4.0
                  "cygncurses6.dll" v0.0 ts=2002/1/9 1:03
  224k 2003/08/09 C:\cygwin\bin\cygncurses7.dll - os=4.0 img=1.0 sys=4.0
                  "cygncurses7.dll" v0.0 ts=2003/8/9 5:24
   11k 2005/09/29 C:\cygwin\bin\cygpanel-8.dll - os=4.0 img=1.0 sys=4.0
                  "cygpanel-8.dll" v0.0 ts=2005/9/28 22:15
   15k 2001/04/25 C:\cygwin\bin\cygpanel5.dll - os=4.0 img=1.0 sys=4.0
                  "cygpanel5.dll" v0.0 ts=2001/4/25 1:27
   12k 2002/01/09 C:\cygwin\bin\cygpanel6.dll - os=4.0 img=1.0 sys=4.0
                  "cygpanel6.dll" v0.0 ts=2002/1/9 1:03
   19k 2003/08/09 C:\cygwin\bin\cygpanel7.dll - os=4.0 img=1.0 sys=4.0
                  "cygpanel7.dll" v0.0 ts=2003/8/9 5:24
  176k 2005/09/06 C:\cygwin\bin\cygpcre-0.dll - os=4.0 img=1.0 sys=4.0
                  "cygpcre-0.dll" v0.0 ts=2005/9/6 16:49
  299k 2005/09/06 C:\cygwin\bin\cygpcrecpp-0.dll - os=4.0 img=1.0 sys=4.0
                  "cygpcrecpp-0.dll" v0.0 ts=2005/9/6 17:26
    6k 2005/09/06 C:\cygwin\bin\cygpcreposix-0.dll - os=4.0 img=1.0 sys=4.0
                  "cygpcreposix-0.dll" v0.0 ts=2005/9/6 17:26
   22k 2002/06/09 C:\cygwin\bin\cygpopt-0.dll - os=4.0 img=1.0 sys=4.0
                  "cygpopt-0.dll" v0.0 ts=2002/6/9 1:45
  108k 2001/06/28 C:\cygwin\bin\cygreadline4.dll - os=4.0 img=1.0 sys=4.0
                  "cygreadline4.dll" v0.0 ts=2001/1/6 23:34
  148k 2003/08/10 C:\cygwin\bin\cygreadline5.dll - os=4.0 img=1.0 sys=4.0
                  "cygreadline5.dll" v0.0 ts=2003/8/10 19:16
  152k 2006/01/28 C:\cygwin\bin\cygreadline6.dll - os=4.0 img=1.0 sys=4.0
                  "cygreadline6.dll" v0.0 ts=2006/1/27 22:06
   65k 2005/08/23 C:\cygwin\bin\cygz.dll - os=4.0 img=1.0 sys=4.0
                  "cygz.dll" v0.0 ts=2005/8/22 22:03
 1763k 2006/01/20 C:\cygwin\bin\cygwin1.dll - os=4.0 img=1.0 sys=4.0
                  "cygwin1.dll" v0.0 ts=2006/1/20 13:28
    Cygwin DLL version info:
        DLL version: 1.5.19
        DLL epoch: 19
        DLL bad signal mask: 19005
        DLL old termios: 5
        DLL malloc env: 28
        API major: 0
        API minor: 150
        Shared data: 4
        DLL identifier: cygwin1
        Mount registry: 2
        Cygnus registry name: Cygnus Solutions
        Cygwin registry name: Cygwin
        Program options name: Program Options
        Cygwin mount registry name: mounts v2
        Cygdrive flags: cygdrive flags
        Cygdrive prefix: cygdrive prefix
        Cygdrive default prefix: 
        Build date: Fri Jan 20 13:28:43 EST 2006
        CVS tag: cr-0x5ef
        Shared id: cygwin1S4


Checking for any Cygwin services... 

Can't find the cygrunsrv utility, skipping services check.


Cygwin Package Information
Last downloaded files to: C:\cygwinpkg
Last downloaded files from: ftp://ftp.cise.ufl.edu/pub/mirrors/cygwin

Package              Version
_update-info-dir     00352-1
alternatives         1.3.20a-2
ash                  20040127-3
base-files           3.7-1
base-passwd          2.2-1
bash                 3.0-14
bzip2                1.0.3-1
coreutils            5.93-3
crypt                1.1-1
cygutils             1.2.9-1
cygwin               1.5.19-4
cygwin-doc           1.4-3
diffutils            2.8.7-1
editrights           1.01-1
findutils            4.2.27-1
gawk                 3.1.5-2
gdb                  20041228-3
gdbm                 1.8.3-7
grep                 2.5.1a-2
groff                1.18.1-2
gzip                 1.3.5-1
less                 381-1
libbz2_1             1.0.3-1
libcharset1          1.9.2-2
libgdbm              1.8.0-5
libgdbm-devel        1.8.3-7
libgdbm3             1.8.3-3
libgdbm4             1.8.3-7
libiconv             1.9.2-2
libiconv2            1.9.2-2
libintl              0.10.38-3
libintl1             0.10.40-1
libintl2             0.12.1-3
libintl3             0.14.5-1
libncurses5          5.2-1
libncurses6          5.2-8
libncurses7          5.3-4
libncurses8          5.4-4
libpcre0             6.3-1
libpopt0             1.6.4-4
libreadline4         4.1-2
libreadline5         4.3-5
libreadline6         5.1-2
login                1.9-7
man                  1.5p-1
mktemp               1.5-3
ncurses              5.4-4
pdksh                5.2.14-3
run                  1.1.6-1
sed                  4.1.4-1
tar                  1.15.1-3
tcltk                20030901-1
termcap              20050421-1
terminfo             5.4_20041009-1
texinfo              4.8-1
vim                  6.4-4
which                1.7-1
zlib                 1.2.3-1

Thanks for any help you can provide on this!

-----
Ernie Coskrey       SteelEye Technology, Inc.    803-461-3875

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