Sorry I did not clarify earlier, I have cygin added to my path and I have not added anything to /cygdrive or otherwise.
C:\tmp>where ls C:\cygwin\bin\ls.exe C:\tmp>C:\cygwin\bin\ls.exe /cygdrive c I noticed that all the paths that I am having issues with are setup via a "subst" in windows You can reproduce this problem easily by following these steps >From the windows cmd.exe shell type subst R: C:\tmp This will create a new drive "R" that will point to C:\tmp In the windows cmd.exe shell type C:\cygwin\bin\ls.exe /cygdrive you will see your C drive but no R drive Open the Cygwin shell Type ls /cygdrive and you will see both C and R I also attached the cygcheck.out to this email as requested. Let me know if there is any more information needed.
cygcheck.out
Description: Binary data
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