Update for next development iteration: commons-math4
Project: http://git-wip-us.apache.org/repos/asf/commons-math/repo Commit: http://git-wip-us.apache.org/repos/asf/commons-math/commit/e4e1ac23 Tree: http://git-wip-us.apache.org/repos/asf/commons-math/tree/e4e1ac23 Diff: http://git-wip-us.apache.org/repos/asf/commons-math/diff/e4e1ac23 Branch: refs/heads/master Commit: e4e1ac23c734f65686be4bc0e503f82f941afd4d Parents: a7b4803 Author: Thomas Neidhart <thomas.neidh...@gmail.com> Authored: Mon Feb 16 23:37:23 2015 +0100 Committer: Thomas Neidhart <thomas.neidh...@gmail.com> Committed: Mon Feb 16 23:37:23 2015 +0100 ---------------------------------------------------------------------- README.md | 2 +- build.xml | 6 +- clirr-ignored.xml | 140 +++++++++--------- findbugs-exclude-filter.xml | 142 +++++++++---------- pom.xml | 34 ++--- src/changes/changes.xml | 2 +- .../java/org/apache/commons/math4/Field.java | 2 +- .../org/apache/commons/math4/FieldElement.java | 6 +- .../apache/commons/math4/RealFieldElement.java | 4 +- .../math4/analysis/BivariateFunction.java | 2 +- .../DifferentiableMultivariateFunction.java | 4 +- ...ifferentiableMultivariateVectorFunction.java | 4 +- .../DifferentiableUnivariateFunction.java | 4 +- .../DifferentiableUnivariateMatrixFunction.java | 4 +- .../DifferentiableUnivariateVectorFunction.java | 4 +- .../commons/math4/analysis/FunctionUtils.java | 22 +-- .../math4/analysis/MultivariateFunction.java | 6 +- .../analysis/MultivariateMatrixFunction.java | 2 +- .../analysis/MultivariateVectorFunction.java | 2 +- .../analysis/ParametricUnivariateFunction.java | 2 +- .../math4/analysis/TrivariateFunction.java | 2 +- .../math4/analysis/UnivariateFunction.java | 2 +- .../analysis/UnivariateMatrixFunction.java | 2 +- .../analysis/UnivariateVectorFunction.java | 2 +- .../analysis/differentiation/DSCompiler.java | 18 +-- .../differentiation/DerivativeStructure.java | 20 +-- .../FiniteDifferencesDifferentiator.java | 18 +-- .../differentiation/GradientFunction.java | 4 +- .../differentiation/JacobianFunction.java | 4 +- .../MultivariateDifferentiableFunction.java | 6 +- ...ultivariateDifferentiableVectorFunction.java | 6 +- .../differentiation/SparseGradient.java | 18 +-- .../UnivariateDifferentiableFunction.java | 6 +- .../UnivariateDifferentiableMatrixFunction.java | 6 +- .../UnivariateDifferentiableVectorFunction.java | 6 +- .../UnivariateFunctionDifferentiator.java | 4 +- .../UnivariateMatrixFunctionDifferentiator.java | 4 +- .../UnivariateVectorFunctionDifferentiator.java | 4 +- .../analysis/differentiation/package-info.java | 12 +- .../commons/math4/analysis/function/Abs.java | 6 +- .../commons/math4/analysis/function/Acos.java | 14 +- .../commons/math4/analysis/function/Acosh.java | 14 +- .../commons/math4/analysis/function/Add.java | 4 +- .../commons/math4/analysis/function/Asin.java | 14 +- .../commons/math4/analysis/function/Asinh.java | 14 +- .../commons/math4/analysis/function/Atan.java | 14 +- .../commons/math4/analysis/function/Atan2.java | 6 +- .../commons/math4/analysis/function/Atanh.java | 14 +- .../commons/math4/analysis/function/Cbrt.java | 14 +- .../commons/math4/analysis/function/Ceil.java | 6 +- .../math4/analysis/function/Constant.java | 8 +- .../commons/math4/analysis/function/Cos.java | 14 +- .../commons/math4/analysis/function/Cosh.java | 10 +- .../commons/math4/analysis/function/Divide.java | 4 +- .../commons/math4/analysis/function/Exp.java | 14 +- .../commons/math4/analysis/function/Expm1.java | 14 +- .../commons/math4/analysis/function/Floor.java | 6 +- .../math4/analysis/function/Gaussian.java | 24 ++-- .../analysis/function/HarmonicOscillator.java | 22 +-- .../math4/analysis/function/Identity.java | 8 +- .../math4/analysis/function/Inverse.java | 12 +- .../commons/math4/analysis/function/Log.java | 14 +- .../commons/math4/analysis/function/Log10.java | 14 +- .../commons/math4/analysis/function/Log1p.java | 14 +- .../math4/analysis/function/Logistic.java | 24 ++-- .../commons/math4/analysis/function/Logit.java | 24 ++-- .../commons/math4/analysis/function/Max.java | 6 +- .../commons/math4/analysis/function/Min.java | 6 +- .../commons/math4/analysis/function/Minus.java | 8 +- .../math4/analysis/function/Multiply.java | 4 +- .../commons/math4/analysis/function/Pow.java | 6 +- .../commons/math4/analysis/function/Power.java | 16 +-- .../commons/math4/analysis/function/Rint.java | 6 +- .../math4/analysis/function/Sigmoid.java | 20 +-- .../commons/math4/analysis/function/Signum.java | 6 +- .../commons/math4/analysis/function/Sin.java | 10 +- .../commons/math4/analysis/function/Sinc.java | 18 +-- .../commons/math4/analysis/function/Sinh.java | 10 +- .../commons/math4/analysis/function/Sqrt.java | 14 +- .../math4/analysis/function/StepFunction.java | 15 +- .../math4/analysis/function/Subtract.java | 4 +- .../commons/math4/analysis/function/Tan.java | 14 +- .../commons/math4/analysis/function/Tanh.java | 14 +- .../commons/math4/analysis/function/Ulp.java | 6 +- .../math4/analysis/function/package-info.java | 2 +- .../BaseAbstractUnivariateIntegrator.java | 26 ++-- .../IterativeLegendreGaussIntegrator.java | 22 +-- .../integration/LegendreGaussIntegrator.java | 16 +-- .../integration/MidPointIntegrator.java | 18 +-- .../analysis/integration/RombergIntegrator.java | 14 +- .../analysis/integration/SimpsonIntegrator.java | 14 +- .../integration/TrapezoidIntegrator.java | 16 +-- .../integration/UnivariateIntegrator.java | 12 +- .../integration/gauss/BaseRuleFactory.java | 11 +- .../integration/gauss/GaussIntegrator.java | 12 +- .../gauss/GaussIntegratorFactory.java | 20 +-- .../integration/gauss/HermiteRuleFactory.java | 8 +- .../gauss/LegendreHighPrecisionRuleFactory.java | 6 +- .../integration/gauss/LegendreRuleFactory.java | 6 +- .../gauss/SymmetricGaussIntegrator.java | 10 +- .../integration/gauss/package-info.java | 2 +- .../analysis/integration/package-info.java | 2 +- .../interpolation/AkimaSplineInterpolator.java | 24 ++-- .../BicubicInterpolatingFunction.java | 15 +- .../interpolation/BicubicInterpolator.java | 12 +- .../BicubicSplineInterpolatingFunction.java | 17 +-- .../BicubicSplineInterpolator.java | 18 +-- .../BivariateGridInterpolator.java | 12 +- .../DividedDifferenceInterpolator.java | 13 +- .../interpolation/FieldHermiteInterpolator.java | 20 +-- .../interpolation/HermiteInterpolator.java | 18 +-- .../interpolation/LinearInterpolator.java | 16 +-- .../interpolation/LoessInterpolator.java | 30 ++-- .../MicrosphereInterpolatingFunction.java | 18 +-- .../interpolation/MicrosphereInterpolator.java | 16 +-- .../interpolation/MultivariateInterpolator.java | 12 +- .../interpolation/NevilleInterpolator.java | 10 +- ...ewiseBicubicSplineInterpolatingFunction.java | 21 +-- .../PiecewiseBicubicSplineInterpolator.java | 12 +- ...hingPolynomialBicubicSplineInterpolator.java | 26 ++-- .../interpolation/SplineInterpolator.java | 16 +-- .../TricubicInterpolatingFunction.java | 16 +-- .../interpolation/TricubicInterpolator.java | 12 +- .../TricubicSplineInterpolatingFunction.java | 16 +-- .../TricubicSplineInterpolator.java | 12 +- .../TrivariateGridInterpolator.java | 12 +- .../interpolation/UnivariateInterpolator.java | 8 +- .../UnivariatePeriodicInterpolator.java | 14 +- .../analysis/interpolation/package-info.java | 2 +- .../commons/math4/analysis/package-info.java | 2 +- .../polynomials/PolynomialFunction.java | 22 +-- .../PolynomialFunctionLagrangeForm.java | 22 +-- .../PolynomialFunctionNewtonForm.java | 18 +-- .../polynomials/PolynomialSplineFunction.java | 24 ++-- .../analysis/polynomials/PolynomialsUtils.java | 8 +- .../analysis/polynomials/package-info.java | 2 +- .../AbstractDifferentiableUnivariateSolver.java | 8 +- .../solvers/AbstractPolynomialSolver.java | 4 +- .../AbstractUnivariateDifferentiableSolver.java | 8 +- .../solvers/AbstractUnivariateSolver.java | 4 +- .../math4/analysis/solvers/AllowedSolution.java | 6 +- .../solvers/BaseAbstractUnivariateSolver.java | 18 +-- .../analysis/solvers/BaseSecantSolver.java | 10 +- .../analysis/solvers/BaseUnivariateSolver.java | 12 +- .../math4/analysis/solvers/BisectionSolver.java | 6 +- .../solvers/BracketedUnivariateSolver.java | 12 +- .../solvers/BracketingNthOrderBrentSolver.java | 18 +-- .../math4/analysis/solvers/BrentSolver.java | 12 +- .../solvers/DifferentiableUnivariateSolver.java | 4 +- .../math4/analysis/solvers/IllinoisSolver.java | 2 +- .../math4/analysis/solvers/LaguerreSolver.java | 30 ++-- .../math4/analysis/solvers/MullerSolver.java | 10 +- .../math4/analysis/solvers/MullerSolver2.java | 10 +- .../analysis/solvers/NewtonRaphsonSolver.java | 14 +- .../math4/analysis/solvers/NewtonSolver.java | 12 +- .../math4/analysis/solvers/PegasusSolver.java | 2 +- .../analysis/solvers/PolynomialSolver.java | 4 +- .../analysis/solvers/RegulaFalsiSolver.java | 2 +- .../math4/analysis/solvers/RiddersSolver.java | 8 +- .../math4/analysis/solvers/SecantSolver.java | 8 +- .../solvers/UnivariateDifferentiableSolver.java | 4 +- .../analysis/solvers/UnivariateSolver.java | 4 +- .../analysis/solvers/UnivariateSolverUtils.java | 18 +-- .../math4/analysis/solvers/package-info.java | 2 +- .../apache/commons/math4/complex/Complex.java | 20 +-- .../commons/math4/complex/ComplexField.java | 6 +- .../commons/math4/complex/ComplexFormat.java | 14 +- .../commons/math4/complex/ComplexUtils.java | 10 +- .../commons/math4/complex/Quaternion.java | 15 +- .../commons/math4/complex/RootsOfUnity.java | 14 +- .../commons/math4/complex/package-info.java | 2 +- .../dfp/BracketingNthOrderBrentSolverDFP.java | 16 +-- .../java/org/apache/commons/math4/dfp/Dfp.java | 12 +- .../org/apache/commons/math4/dfp/DfpDec.java | 2 +- .../org/apache/commons/math4/dfp/DfpField.java | 6 +- .../org/apache/commons/math4/dfp/DfpMath.java | 2 +- .../math4/dfp/UnivariateDfpFunction.java | 2 +- .../apache/commons/math4/dfp/package-info.java | 2 +- .../AbstractIntegerDistribution.java | 18 +-- .../AbstractMultivariateRealDistribution.java | 8 +- .../distribution/AbstractRealDistribution.java | 20 +-- .../math4/distribution/BetaDistribution.java | 16 +-- .../distribution/BinomialDistribution.java | 18 +-- .../math4/distribution/CauchyDistribution.java | 14 +- .../distribution/ChiSquaredDistribution.java | 6 +- .../distribution/ConstantRealDistribution.java | 4 +- .../distribution/EnumeratedDistribution.java | 24 ++-- .../EnumeratedIntegerDistribution.java | 18 +-- .../EnumeratedRealDistribution.java | 20 +-- .../distribution/ExponentialDistribution.java | 20 +-- .../math4/distribution/FDistribution.java | 14 +- .../math4/distribution/GammaDistribution.java | 16 +-- .../distribution/GeometricDistribution.java | 12 +- .../math4/distribution/GumbelDistribution.java | 18 +-- .../HypergeometricDistribution.java | 16 +-- .../math4/distribution/IntegerDistribution.java | 8 +- .../KolmogorovSmirnovDistribution.java | 46 +++--- .../math4/distribution/LaplaceDistribution.java | 16 +-- .../math4/distribution/LevyDistribution.java | 12 +- .../distribution/LogNormalDistribution.java | 18 +-- .../distribution/LogisticDistribution.java | 18 +-- .../MixtureMultivariateNormalDistribution.java | 14 +- .../MixtureMultivariateRealDistribution.java | 16 +-- .../MultivariateNormalDistribution.java | 24 ++-- .../MultivariateRealDistribution.java | 6 +- .../distribution/NakagamiDistribution.java | 18 +-- .../math4/distribution/NormalDistribution.java | 18 +-- .../math4/distribution/ParetoDistribution.java | 14 +- .../math4/distribution/PascalDistribution.java | 20 +-- .../math4/distribution/PoissonDistribution.java | 18 +-- .../math4/distribution/RealDistribution.java | 8 +- .../distribution/SaddlePointExpansion.java | 8 +- .../math4/distribution/TDistribution.java | 16 +-- .../distribution/TriangularDistribution.java | 16 +-- .../UniformIntegerDistribution.java | 10 +- .../distribution/UniformRealDistribution.java | 12 +- .../math4/distribution/WeibullDistribution.java | 18 +-- .../math4/distribution/ZipfDistribution.java | 12 +- ...ateNormalMixtureExpectationMaximization.java | 32 ++--- .../distribution/fitting/package-info.java | 2 +- .../math4/distribution/package-info.java | 2 +- .../math4/exception/ConvergenceException.java | 6 +- .../exception/DimensionMismatchException.java | 6 +- .../exception/InsufficientDataException.java | 6 +- .../exception/MathArithmeticException.java | 10 +- .../exception/MathIllegalArgumentException.java | 8 +- .../exception/MathIllegalNumberException.java | 4 +- .../exception/MathIllegalStateException.java | 10 +- .../math4/exception/MathInternalError.java | 6 +- .../math4/exception/MathParseException.java | 6 +- .../math4/exception/MathRuntimeException.java | 8 +- .../MathUnsupportedOperationException.java | 10 +- .../exception/MaxCountExceededException.java | 6 +- .../MultiDimensionMismatchException.java | 6 +- .../math4/exception/NoBracketingException.java | 6 +- .../math4/exception/NoDataException.java | 6 +- .../NonMonotonicSequenceException.java | 6 +- .../math4/exception/NotANumberException.java | 4 +- .../exception/NotFiniteNumberException.java | 6 +- .../math4/exception/NotPositiveException.java | 4 +- .../exception/NotStrictlyPositiveException.java | 4 +- .../math4/exception/NullArgumentException.java | 6 +- .../exception/NumberIsTooLargeException.java | 6 +- .../exception/NumberIsTooSmallException.java | 6 +- .../math4/exception/OutOfRangeException.java | 6 +- .../exception/TooManyEvaluationsException.java | 4 +- .../exception/TooManyIterationsException.java | 4 +- .../commons/math4/exception/ZeroException.java | 6 +- .../commons/math4/exception/package-info.java | 2 +- .../commons/math4/exception/util/ArgUtils.java | 2 +- .../math4/exception/util/DummyLocalizable.java | 2 +- .../math4/exception/util/ExceptionContext.java | 2 +- .../util/ExceptionContextProvider.java | 2 +- .../math4/exception/util/Localizable.java | 2 +- .../math4/exception/util/LocalizedFormats.java | 2 +- .../math4/exception/util/package-info.java | 2 +- .../math4/filter/DefaultMeasurementModel.java | 12 +- .../math4/filter/DefaultProcessModel.java | 18 +-- .../commons/math4/filter/KalmanFilter.java | 28 ++-- .../commons/math4/filter/MeasurementModel.java | 6 +- .../commons/math4/filter/ProcessModel.java | 6 +- .../commons/math4/filter/package-info.java | 2 +- .../math4/fitting/AbstractCurveFitter.java | 14 +- .../commons/math4/fitting/CurveFitter.java | 31 ++-- .../math4/fitting/GaussianCurveFitter.java | 28 ++-- .../commons/math4/fitting/GaussianFitter.java | 25 ++-- .../math4/fitting/HarmonicCurveFitter.java | 22 +-- .../commons/math4/fitting/HarmonicFitter.java | 16 +-- .../math4/fitting/PolynomialCurveFitter.java | 14 +- .../commons/math4/fitting/PolynomialFitter.java | 12 +- .../math4/fitting/SimpleCurveFitter.java | 10 +- .../math4/fitting/WeightedObservedPoint.java | 2 +- .../math4/fitting/WeightedObservedPoints.java | 2 +- .../leastsquares/AbstractEvaluation.java | 16 +-- .../leastsquares/DenseWeightedEvaluation.java | 8 +- .../leastsquares/EvaluationRmsChecker.java | 8 +- .../leastsquares/GaussNewtonOptimizer.java | 36 ++--- .../leastsquares/LeastSquaresAdapter.java | 8 +- .../leastsquares/LeastSquaresBuilder.java | 20 +-- .../leastsquares/LeastSquaresFactory.java | 46 +++--- .../leastsquares/LeastSquaresOptimizer.java | 2 +- .../leastsquares/LeastSquaresProblem.java | 18 +-- .../LevenbergMarquardtOptimizer.java | 20 +-- .../MultivariateJacobianFunction.java | 8 +- .../math4/fitting/leastsquares/OptimumImpl.java | 10 +- .../leastsquares/ParameterValidator.java | 4 +- .../leastsquares/ValueAndJacobianFunction.java | 6 +- .../fitting/leastsquares/package-info.java | 10 +- .../commons/math4/fitting/package-info.java | 2 +- .../commons/math4/fraction/AbstractFormat.java | 6 +- .../commons/math4/fraction/BigFraction.java | 20 +-- .../math4/fraction/BigFractionField.java | 6 +- .../math4/fraction/BigFractionFormat.java | 8 +- .../apache/commons/math4/fraction/Fraction.java | 14 +- .../fraction/FractionConversionException.java | 6 +- .../commons/math4/fraction/FractionField.java | 6 +- .../commons/math4/fraction/FractionFormat.java | 8 +- .../math4/fraction/ProperBigFractionFormat.java | 6 +- .../math4/fraction/ProperFractionFormat.java | 10 +- .../commons/math4/fraction/package-info.java | 2 +- .../math4/genetics/AbstractListChromosome.java | 2 +- .../math4/genetics/BinaryChromosome.java | 5 +- .../commons/math4/genetics/BinaryMutation.java | 6 +- .../commons/math4/genetics/Chromosome.java | 2 +- .../commons/math4/genetics/ChromosomePair.java | 2 +- .../commons/math4/genetics/CrossoverPolicy.java | 4 +- .../commons/math4/genetics/CycleCrossover.java | 8 +- .../math4/genetics/ElitisticListPopulation.java | 14 +- .../apache/commons/math4/genetics/Fitness.java | 2 +- .../math4/genetics/FixedElapsedTime.java | 4 +- .../math4/genetics/FixedGenerationCount.java | 4 +- .../math4/genetics/GeneticAlgorithm.java | 10 +- .../InvalidRepresentationException.java | 6 +- .../commons/math4/genetics/ListPopulation.java | 12 +- .../commons/math4/genetics/MutationPolicy.java | 4 +- .../commons/math4/genetics/NPointCrossover.java | 14 +- .../math4/genetics/OnePointCrossover.java | 8 +- .../math4/genetics/OrderedCrossover.java | 12 +- .../math4/genetics/PermutationChromosome.java | 2 +- .../commons/math4/genetics/Population.java | 4 +- .../commons/math4/genetics/RandomKey.java | 8 +- .../math4/genetics/RandomKeyMutation.java | 6 +- .../commons/math4/genetics/SelectionPolicy.java | 4 +- .../math4/genetics/StoppingCondition.java | 2 +- .../math4/genetics/TournamentSelection.java | 6 +- .../math4/genetics/UniformCrossover.java | 12 +- .../commons/math4/genetics/package-info.java | 2 +- .../apache/commons/math4/geometry/Point.java | 2 +- .../apache/commons/math4/geometry/Space.java | 4 +- .../apache/commons/math4/geometry/Vector.java | 4 +- .../commons/math4/geometry/VectorFormat.java | 6 +- .../math4/geometry/enclosing/Encloser.java | 6 +- .../math4/geometry/enclosing/EnclosingBall.java | 6 +- .../enclosing/SupportBallGenerator.java | 6 +- .../math4/geometry/enclosing/WelzlEncloser.java | 8 +- .../math4/geometry/enclosing/package-info.java | 2 +- .../geometry/euclidean/oned/Euclidean1D.java | 8 +- .../math4/geometry/euclidean/oned/Interval.java | 4 +- .../geometry/euclidean/oned/IntervalsSet.java | 18 +-- .../geometry/euclidean/oned/OrientedPoint.java | 12 +- .../euclidean/oned/SubOrientedPoint.java | 10 +- .../math4/geometry/euclidean/oned/Vector1D.java | 16 +-- .../geometry/euclidean/oned/Vector1DFormat.java | 10 +- .../geometry/euclidean/oned/package-info.java | 2 +- .../threed/CardanEulerSingularityException.java | 6 +- .../geometry/euclidean/threed/Euclidean3D.java | 6 +- .../euclidean/threed/FieldRotation.java | 16 +-- .../euclidean/threed/FieldVector3D.java | 14 +- .../math4/geometry/euclidean/threed/Line.java | 24 ++-- .../threed/NotARotationMatrixException.java | 6 +- .../euclidean/threed/OutlineExtractor.java | 36 ++--- .../math4/geometry/euclidean/threed/Plane.java | 32 ++--- .../euclidean/threed/PolyhedronsSet.java | 36 ++--- .../geometry/euclidean/threed/Rotation.java | 12 +- .../euclidean/threed/RotationOrder.java | 2 +- .../geometry/euclidean/threed/Segment.java | 2 +- .../euclidean/threed/SphereGenerator.java | 16 +-- .../euclidean/threed/SphericalCoordinates.java | 4 +- .../geometry/euclidean/threed/SubLine.java | 16 +-- .../geometry/euclidean/threed/SubPlane.java | 36 ++--- .../geometry/euclidean/threed/Vector3D.java | 20 +-- .../euclidean/threed/Vector3DFormat.java | 10 +- .../geometry/euclidean/threed/package-info.java | 2 +- .../geometry/euclidean/twod/DiskGenerator.java | 10 +- .../geometry/euclidean/twod/Euclidean2D.java | 6 +- .../math4/geometry/euclidean/twod/Line.java | 40 +++--- .../geometry/euclidean/twod/NestedLoops.java | 16 +-- .../geometry/euclidean/twod/PolygonsSet.java | 36 ++--- .../math4/geometry/euclidean/twod/Segment.java | 6 +- .../math4/geometry/euclidean/twod/SubLine.java | 30 ++-- .../math4/geometry/euclidean/twod/Vector2D.java | 20 +-- .../geometry/euclidean/twod/Vector2DFormat.java | 10 +- .../hull/AbstractConvexHullGenerator2D.java | 12 +- .../twod/hull/AklToussaintHeuristic.java | 4 +- .../euclidean/twod/hull/ConvexHull2D.java | 26 ++-- .../twod/hull/ConvexHullGenerator2D.java | 12 +- .../euclidean/twod/hull/MonotoneChain.java | 10 +- .../euclidean/twod/hull/package-info.java | 2 +- .../geometry/euclidean/twod/package-info.java | 2 +- .../commons/math4/geometry/hull/ConvexHull.java | 10 +- .../geometry/hull/ConvexHullGenerator.java | 10 +- .../math4/geometry/hull/package-info.java | 2 +- .../commons/math4/geometry/package-info.java | 2 +- .../geometry/partitioning/AbstractRegion.java | 8 +- .../partitioning/AbstractSubHyperplane.java | 4 +- .../math4/geometry/partitioning/BSPTree.java | 16 +-- .../geometry/partitioning/BSPTreeVisitor.java | 4 +- .../partitioning/BoundaryAttribute.java | 4 +- .../geometry/partitioning/BoundaryBuilder.java | 4 +- .../partitioning/BoundaryProjection.java | 6 +- .../partitioning/BoundaryProjector.java | 10 +- .../partitioning/BoundarySizeVisitor.java | 4 +- .../geometry/partitioning/Characterization.java | 6 +- .../math4/geometry/partitioning/Embedding.java | 12 +- .../math4/geometry/partitioning/Hyperplane.java | 6 +- .../geometry/partitioning/InsideFinder.java | 4 +- .../math4/geometry/partitioning/NodesSet.java | 4 +- .../math4/geometry/partitioning/Region.java | 6 +- .../geometry/partitioning/RegionFactory.java | 10 +- .../math4/geometry/partitioning/Side.java | 2 +- .../geometry/partitioning/SubHyperplane.java | 4 +- .../math4/geometry/partitioning/Transform.java | 6 +- .../geometry/partitioning/package-info.java | 8 +- .../partitioning/utilities/AVLTree.java | 2 +- .../partitioning/utilities/OrderedTuple.java | 4 +- .../partitioning/utilities/package-info.java | 2 +- .../math4/geometry/spherical/oned/Arc.java | 14 +- .../math4/geometry/spherical/oned/ArcsSet.java | 34 ++--- .../geometry/spherical/oned/LimitAngle.java | 10 +- .../math4/geometry/spherical/oned/S1Point.java | 12 +- .../math4/geometry/spherical/oned/Sphere1D.java | 8 +- .../geometry/spherical/oned/SubLimitAngle.java | 10 +- .../geometry/spherical/oned/package-info.java | 2 +- .../math4/geometry/spherical/twod/Circle.java | 32 ++--- .../math4/geometry/spherical/twod/Edge.java | 10 +- .../geometry/spherical/twod/EdgesBuilder.java | 20 +-- .../spherical/twod/PropertiesComputer.java | 14 +- .../math4/geometry/spherical/twod/S2Point.java | 18 +-- .../math4/geometry/spherical/twod/Sphere2D.java | 6 +- .../spherical/twod/SphericalPolygonsSet.java | 38 ++--- .../geometry/spherical/twod/SubCircle.java | 20 +-- .../math4/geometry/spherical/twod/Vertex.java | 2 +- .../geometry/spherical/twod/package-info.java | 2 +- .../math4/linear/AbstractFieldMatrix.java | 24 ++-- .../math4/linear/AbstractRealMatrix.java | 22 +-- .../apache/commons/math4/linear/AnyMatrix.java | 2 +- .../math4/linear/Array2DRowFieldMatrix.java | 26 ++-- .../math4/linear/Array2DRowRealMatrix.java | 20 +-- .../commons/math4/linear/ArrayFieldVector.java | 28 ++-- .../commons/math4/linear/ArrayRealVector.java | 22 +-- .../math4/linear/BiDiagonalTransformer.java | 4 +- .../commons/math4/linear/BlockFieldMatrix.java | 26 ++-- .../commons/math4/linear/BlockRealMatrix.java | 20 +-- .../math4/linear/CholeskyDecomposition.java | 6 +- .../commons/math4/linear/ConjugateGradient.java | 12 +- .../math4/linear/DecompositionSolver.java | 6 +- .../DefaultFieldMatrixChangingVisitor.java | 4 +- .../DefaultFieldMatrixPreservingVisitor.java | 4 +- .../DefaultIterativeLinearSolverEvent.java | 4 +- .../DefaultRealMatrixChangingVisitor.java | 2 +- .../DefaultRealMatrixPreservingVisitor.java | 2 +- .../commons/math4/linear/DiagonalMatrix.java | 18 +-- .../math4/linear/EigenDecomposition.java | 20 +-- .../math4/linear/FieldDecompositionSolver.java | 8 +- .../math4/linear/FieldLUDecomposition.java | 10 +- .../commons/math4/linear/FieldMatrix.java | 24 ++-- .../linear/FieldMatrixChangingVisitor.java | 4 +- .../linear/FieldMatrixPreservingVisitor.java | 4 +- .../commons/math4/linear/FieldVector.java | 18 +-- .../linear/FieldVectorChangingVisitor.java | 4 +- .../linear/FieldVectorPreservingVisitor.java | 4 +- .../math4/linear/HessenbergTransformer.java | 6 +- .../linear/IllConditionedOperatorException.java | 6 +- .../math4/linear/IterativeLinearSolver.java | 18 +-- .../linear/IterativeLinearSolverEvent.java | 6 +- .../math4/linear/JacobiPreconditioner.java | 6 +- .../commons/math4/linear/LUDecomposition.java | 6 +- .../MatrixDimensionMismatchException.java | 6 +- .../commons/math4/linear/MatrixUtils.java | 38 ++--- .../NonPositiveDefiniteMatrixException.java | 8 +- .../NonPositiveDefiniteOperatorException.java | 6 +- .../linear/NonSelfAdjointOperatorException.java | 6 +- .../math4/linear/NonSquareMatrixException.java | 6 +- .../linear/NonSquareOperatorException.java | 6 +- .../linear/NonSymmetricMatrixException.java | 6 +- .../commons/math4/linear/OpenMapRealMatrix.java | 12 +- .../commons/math4/linear/OpenMapRealVector.java | 18 +-- .../PreconditionedIterativeLinearSolver.java | 18 +-- .../commons/math4/linear/QRDecomposition.java | 6 +- .../commons/math4/linear/RRQRDecomposition.java | 4 +- .../math4/linear/RealLinearOperator.java | 6 +- .../apache/commons/math4/linear/RealMatrix.java | 18 +-- .../math4/linear/RealMatrixChangingVisitor.java | 2 +- .../commons/math4/linear/RealMatrixFormat.java | 6 +- .../linear/RealMatrixPreservingVisitor.java | 2 +- .../apache/commons/math4/linear/RealVector.java | 28 ++-- .../math4/linear/RealVectorChangingVisitor.java | 2 +- .../commons/math4/linear/RealVectorFormat.java | 6 +- .../linear/RealVectorPreservingVisitor.java | 2 +- .../RectangularCholeskyDecomposition.java | 6 +- .../commons/math4/linear/SchurTransformer.java | 10 +- .../math4/linear/SingularMatrixException.java | 6 +- .../math4/linear/SingularOperatorException.java | 6 +- .../linear/SingularValueDecomposition.java | 14 +- .../commons/math4/linear/SparseFieldMatrix.java | 10 +- .../commons/math4/linear/SparseFieldVector.java | 26 ++-- .../commons/math4/linear/SparseRealMatrix.java | 2 +- .../commons/math4/linear/SparseRealVector.java | 2 +- .../org/apache/commons/math4/linear/SymmLQ.java | 22 +-- .../math4/linear/TriDiagonalTransformer.java | 4 +- .../commons/math4/linear/package-info.java | 2 +- .../math4/ml/clustering/CentroidCluster.java | 2 +- .../commons/math4/ml/clustering/Cluster.java | 2 +- .../math4/ml/clustering/Clusterable.java | 2 +- .../commons/math4/ml/clustering/Clusterer.java | 8 +- .../math4/ml/clustering/DBSCANClusterer.java | 12 +- .../math4/ml/clustering/DoublePoint.java | 2 +- .../ml/clustering/FuzzyKMeansClusterer.java | 26 ++-- .../ml/clustering/KMeansPlusPlusClusterer.java | 22 +-- .../MultiKMeansPlusPlusClusterer.java | 10 +- .../clustering/evaluation/ClusterEvaluator.java | 14 +- .../evaluation/SumOfClusterVariances.java | 10 +- .../ml/clustering/evaluation/package-info.java | 2 +- .../math4/ml/clustering/package-info.java | 2 +- .../math4/ml/distance/CanberraDistance.java | 4 +- .../math4/ml/distance/ChebyshevDistance.java | 4 +- .../math4/ml/distance/DistanceMeasure.java | 2 +- .../math4/ml/distance/EarthMoversDistance.java | 4 +- .../math4/ml/distance/EuclideanDistance.java | 4 +- .../math4/ml/distance/ManhattanDistance.java | 4 +- .../commons/math4/ml/distance/package-info.java | 2 +- .../math4/ml/neuralnet/FeatureInitializer.java | 2 +- .../ml/neuralnet/FeatureInitializerFactory.java | 16 +-- .../commons/math4/ml/neuralnet/MapUtils.java | 15 +- .../commons/math4/ml/neuralnet/Network.java | 7 +- .../commons/math4/ml/neuralnet/Neuron.java | 7 +- .../math4/ml/neuralnet/SquareNeighbourhood.java | 2 +- .../math4/ml/neuralnet/UpdateAction.java | 2 +- .../math4/ml/neuralnet/oned/NeuronString.java | 11 +- .../math4/ml/neuralnet/oned/package-info.java | 2 +- .../math4/ml/neuralnet/package-info.java | 2 +- .../ml/neuralnet/sofm/KohonenTrainingTask.java | 5 +- .../ml/neuralnet/sofm/KohonenUpdateAction.java | 17 +-- .../neuralnet/sofm/LearningFactorFunction.java | 2 +- .../sofm/LearningFactorFunctionFactory.java | 22 +-- .../sofm/NeighbourhoodSizeFunction.java | 2 +- .../sofm/NeighbourhoodSizeFunctionFactory.java | 22 +-- .../math4/ml/neuralnet/sofm/package-info.java | 2 +- .../sofm/util/ExponentialDecayFunction.java | 8 +- .../sofm/util/QuasiSigmoidDecayFunction.java | 8 +- .../ml/neuralnet/sofm/util/package-info.java | 2 +- .../ml/neuralnet/twod/NeuronSquareMesh2D.java | 19 +-- .../math4/ml/neuralnet/twod/package-info.java | 2 +- .../apache/commons/math4/ml/package-info.java | 2 +- .../commons/math4/ode/AbstractIntegrator.java | 30 ++-- .../math4/ode/AbstractParameterizable.java | 2 +- .../math4/ode/ContinuousOutputModel.java | 26 ++-- .../commons/math4/ode/EquationsMapper.java | 4 +- .../math4/ode/ExpandableStatefulODE.java | 6 +- .../commons/math4/ode/FirstOrderConverter.java | 2 +- .../ode/FirstOrderDifferentialEquations.java | 6 +- .../commons/math4/ode/FirstOrderIntegrator.java | 16 +-- .../commons/math4/ode/JacobianMatrices.java | 10 +- .../math4/ode/MainStateJacobianProvider.java | 6 +- .../commons/math4/ode/MultistepIntegrator.java | 30 ++-- .../apache/commons/math4/ode/ODEIntegrator.java | 8 +- .../math4/ode/ParameterConfiguration.java | 2 +- .../math4/ode/ParameterJacobianProvider.java | 6 +- .../math4/ode/ParameterJacobianWrapper.java | 6 +- .../commons/math4/ode/Parameterizable.java | 2 +- .../commons/math4/ode/ParameterizedODE.java | 2 +- .../commons/math4/ode/ParameterizedWrapper.java | 6 +- .../ode/SecondOrderDifferentialEquations.java | 2 +- .../math4/ode/SecondOrderIntegrator.java | 6 +- .../commons/math4/ode/SecondaryEquations.java | 6 +- .../math4/ode/UnknownParameterException.java | 6 +- .../commons/math4/ode/events/EventFilter.java | 4 +- .../commons/math4/ode/events/EventHandler.java | 24 ++-- .../commons/math4/ode/events/EventState.java | 28 ++-- .../commons/math4/ode/events/FilterType.java | 8 +- .../commons/math4/ode/events/Transformer.java | 6 +- .../commons/math4/ode/events/package-info.java | 4 +- .../ode/nonstiff/AdamsBashforthIntegrator.java | 22 +-- .../math4/ode/nonstiff/AdamsIntegrator.java | 16 +-- .../ode/nonstiff/AdamsMoultonIntegrator.java | 22 +-- .../ode/nonstiff/AdamsNordsieckTransformer.java | 22 +-- .../nonstiff/AdaptiveStepsizeIntegrator.java | 20 +-- .../nonstiff/ClassicalRungeKuttaIntegrator.java | 2 +- .../ClassicalRungeKuttaStepInterpolator.java | 4 +- .../ode/nonstiff/DormandPrince54Integrator.java | 4 +- .../DormandPrince54StepInterpolator.java | 8 +- .../nonstiff/DormandPrince853Integrator.java | 4 +- .../DormandPrince853StepInterpolator.java | 10 +- .../nonstiff/EmbeddedRungeKuttaIntegrator.java | 16 +-- .../math4/ode/nonstiff/EulerIntegrator.java | 2 +- .../ode/nonstiff/EulerStepInterpolator.java | 6 +- .../math4/ode/nonstiff/GillIntegrator.java | 4 +- .../ode/nonstiff/GillStepInterpolator.java | 8 +- .../nonstiff/GraggBulirschStoerIntegrator.java | 24 ++-- .../GraggBulirschStoerStepInterpolator.java | 10 +- .../ode/nonstiff/HighamHall54Integrator.java | 4 +- .../nonstiff/HighamHall54StepInterpolator.java | 6 +- .../math4/ode/nonstiff/LutherIntegrator.java | 4 +- .../ode/nonstiff/LutherStepInterpolator.java | 8 +- .../math4/ode/nonstiff/MidpointIntegrator.java | 2 +- .../ode/nonstiff/MidpointStepInterpolator.java | 6 +- .../ode/nonstiff/RungeKuttaIntegrator.java | 18 +-- .../nonstiff/RungeKuttaStepInterpolator.java | 8 +- .../ode/nonstiff/ThreeEighthesIntegrator.java | 2 +- .../nonstiff/ThreeEighthesStepInterpolator.java | 6 +- .../math4/ode/nonstiff/package-info.java | 2 +- .../apache/commons/math4/ode/package-info.java | 60 ++++---- .../ode/sampling/AbstractStepInterpolator.java | 12 +- .../math4/ode/sampling/DummyStepHandler.java | 2 +- .../math4/ode/sampling/FixedStepHandler.java | 2 +- .../ode/sampling/NordsieckStepInterpolator.java | 14 +- .../commons/math4/ode/sampling/StepHandler.java | 10 +- .../math4/ode/sampling/StepInterpolator.java | 16 +-- .../math4/ode/sampling/StepNormalizer.java | 8 +- .../ode/sampling/StepNormalizerBounds.java | 2 +- .../math4/ode/sampling/StepNormalizerMode.java | 2 +- .../math4/ode/sampling/package-info.java | 14 +- .../math4/optim/AbstractConvergenceChecker.java | 2 +- .../optim/AbstractOptimizationProblem.java | 8 +- .../BaseMultiStartMultivariateOptimizer.java | 10 +- .../math4/optim/BaseMultivariateOptimizer.java | 8 +- .../commons/math4/optim/BaseOptimizer.java | 8 +- .../commons/math4/optim/ConvergenceChecker.java | 8 +- .../commons/math4/optim/InitialGuess.java | 2 +- .../org/apache/commons/math4/optim/MaxEval.java | 4 +- .../org/apache/commons/math4/optim/MaxIter.java | 4 +- .../commons/math4/optim/OptimizationData.java | 2 +- .../math4/optim/OptimizationProblem.java | 4 +- .../commons/math4/optim/PointValuePair.java | 7 +- .../math4/optim/PointVectorValuePair.java | 7 +- .../commons/math4/optim/SimpleBounds.java | 2 +- .../commons/math4/optim/SimplePointChecker.java | 8 +- .../commons/math4/optim/SimpleValueChecker.java | 6 +- .../math4/optim/SimpleVectorValueChecker.java | 6 +- .../math4/optim/linear/LinearConstraint.java | 9 +- .../math4/optim/linear/LinearConstraintSet.java | 4 +- .../optim/linear/LinearObjectiveFunction.java | 13 +- .../math4/optim/linear/LinearOptimizer.java | 11 +- .../linear/NoFeasibleSolutionException.java | 6 +- .../optim/linear/NonNegativeConstraint.java | 4 +- .../math4/optim/linear/PivotSelectionRule.java | 4 +- .../math4/optim/linear/Relationship.java | 2 +- .../math4/optim/linear/SimplexSolver.java | 18 +-- .../math4/optim/linear/SimplexTableau.java | 14 +- .../math4/optim/linear/SolutionCallback.java | 6 +- .../linear/UnboundedSolutionException.java | 6 +- .../math4/optim/linear/package-info.java | 2 +- .../math4/optim/nonlinear/scalar/GoalType.java | 4 +- .../scalar/GradientMultivariateOptimizer.java | 12 +- .../nonlinear/scalar/LeastSquaresConverter.java | 10 +- .../optim/nonlinear/scalar/LineSearch.java | 22 +-- .../scalar/MultiStartMultivariateOptimizer.java | 13 +- .../MultivariateFunctionMappingAdapter.java | 28 ++-- .../MultivariateFunctionPenaltyAdapter.java | 18 +-- .../nonlinear/scalar/MultivariateOptimizer.java | 14 +- .../nonlinear/scalar/ObjectiveFunction.java | 6 +- .../scalar/ObjectiveFunctionGradient.java | 6 +- .../NonLinearConjugateGradientOptimizer.java | 26 ++-- .../scalar/gradient/Preconditioner.java | 2 +- .../nonlinear/scalar/gradient/package-info.java | 2 +- .../scalar/noderiv/AbstractSimplex.java | 26 ++-- .../scalar/noderiv/BOBYQAOptimizer.java | 26 ++-- .../scalar/noderiv/CMAESOptimizer.java | 36 ++--- .../scalar/noderiv/MultiDirectionalSimplex.java | 12 +- .../scalar/noderiv/NelderMeadSimplex.java | 10 +- .../scalar/noderiv/PowellOptimizer.java | 30 ++-- .../scalar/noderiv/SimplexOptimizer.java | 27 ++-- .../nonlinear/scalar/noderiv/package-info.java | 2 +- .../optim/nonlinear/scalar/package-info.java | 2 +- .../JacobianMultivariateVectorOptimizer.java | 18 +-- .../optim/nonlinear/vector/ModelFunction.java | 8 +- .../nonlinear/vector/ModelFunctionJacobian.java | 8 +- .../MultiStartMultivariateVectorOptimizer.java | 19 +-- .../vector/MultivariateVectorOptimizer.java | 18 +-- .../math4/optim/nonlinear/vector/Target.java | 6 +- .../math4/optim/nonlinear/vector/Weight.java | 12 +- .../jacobian/AbstractLeastSquaresOptimizer.java | 40 +++--- .../vector/jacobian/GaussNewtonOptimizer.java | 34 ++--- .../jacobian/LevenbergMarquardtOptimizer.java | 21 +-- .../nonlinear/vector/jacobian/package-info.java | 4 +- .../optim/nonlinear/vector/package-info.java | 4 +- .../commons/math4/optim/package-info.java | 36 ++--- .../math4/optim/univariate/BracketFinder.java | 16 +-- .../math4/optim/univariate/BrentOptimizer.java | 14 +- .../MultiStartUnivariateOptimizer.java | 17 +-- .../math4/optim/univariate/SearchInterval.java | 8 +- .../SimpleUnivariateValueChecker.java | 10 +- .../univariate/UnivariateObjectiveFunction.java | 6 +- .../optim/univariate/UnivariateOptimizer.java | 14 +- .../univariate/UnivariatePointValuePair.java | 2 +- .../math4/optim/univariate/package-info.java | 2 +- .../AbstractConvergenceChecker.java | 4 +- .../BaseMultivariateMultiStartOptimizer.java | 14 +- .../optimization/BaseMultivariateOptimizer.java | 16 +-- .../BaseMultivariateSimpleBoundsOptimizer.java | 18 +-- ...seMultivariateVectorMultiStartOptimizer.java | 16 +-- .../BaseMultivariateVectorOptimizer.java | 14 +- .../math4/optimization/BaseOptimizer.java | 10 +- .../math4/optimization/ConvergenceChecker.java | 8 +- ...entiableMultivariateMultiStartOptimizer.java | 6 +- .../DifferentiableMultivariateOptimizer.java | 4 +- ...leMultivariateVectorMultiStartOptimizer.java | 6 +- ...fferentiableMultivariateVectorOptimizer.java | 4 +- .../commons/math4/optimization/GoalType.java | 2 +- .../math4/optimization/InitialGuess.java | 2 +- .../optimization/LeastSquaresConverter.java | 10 +- ...ariateDifferentiableMultiStartOptimizer.java | 6 +- .../MultivariateDifferentiableOptimizer.java | 4 +- ...DifferentiableVectorMultiStartOptimizer.java | 6 +- ...ltivariateDifferentiableVectorOptimizer.java | 4 +- .../MultivariateMultiStartOptimizer.java | 6 +- .../optimization/MultivariateOptimizer.java | 4 +- .../math4/optimization/OptimizationData.java | 2 +- .../math4/optimization/PointValuePair.java | 6 +- .../optimization/PointVectorValuePair.java | 6 +- .../math4/optimization/SimpleBounds.java | 2 +- .../math4/optimization/SimplePointChecker.java | 8 +- .../math4/optimization/SimpleValueChecker.java | 6 +- .../optimization/SimpleVectorValueChecker.java | 6 +- .../commons/math4/optimization/Target.java | 2 +- .../commons/math4/optimization/Weight.java | 8 +- .../optimization/direct/AbstractSimplex.java | 26 ++-- .../optimization/direct/BOBYQAOptimizer.java | 28 ++-- .../BaseAbstractMultivariateOptimizer.java | 38 ++--- ...stractMultivariateSimpleBoundsOptimizer.java | 22 +-- ...BaseAbstractMultivariateVectorOptimizer.java | 38 ++--- .../optimization/direct/CMAESOptimizer.java | 44 +++--- .../direct/MultiDirectionalSimplex.java | 12 +- .../MultivariateFunctionMappingAdapter.java | 22 +-- .../MultivariateFunctionPenaltyAdapter.java | 12 +- .../optimization/direct/NelderMeadSimplex.java | 10 +- .../optimization/direct/PowellOptimizer.java | 34 ++--- .../optimization/direct/SimplexOptimizer.java | 20 +-- .../math4/optimization/direct/package-info.java | 2 +- .../math4/optimization/fitting/CurveFitter.java | 24 ++-- .../optimization/fitting/GaussianFitter.java | 24 ++-- .../optimization/fitting/HarmonicFitter.java | 16 +-- .../optimization/fitting/PolynomialFitter.java | 14 +- .../fitting/WeightedObservedPoint.java | 2 +- .../optimization/fitting/package-info.java | 2 +- .../AbstractDifferentiableOptimizer.java | 20 +-- .../general/AbstractLeastSquaresOptimizer.java | 86 +++++------ .../AbstractScalarDifferentiableOptimizer.java | 32 ++--- .../general/ConjugateGradientFormula.java | 2 +- .../general/GaussNewtonOptimizer.java | 32 ++--- .../general/LevenbergMarquardtOptimizer.java | 16 +-- .../NonLinearConjugateGradientOptimizer.java | 22 +-- .../optimization/general/Preconditioner.java | 2 +- .../optimization/general/package-info.java | 2 +- .../linear/AbstractLinearOptimizer.java | 10 +- .../optimization/linear/LinearConstraint.java | 8 +- .../linear/LinearObjectiveFunction.java | 8 +- .../optimization/linear/LinearOptimizer.java | 8 +- .../linear/NoFeasibleSolutionException.java | 6 +- .../math4/optimization/linear/Relationship.java | 2 +- .../optimization/linear/SimplexSolver.java | 8 +- .../optimization/linear/SimplexTableau.java | 18 +-- .../linear/UnboundedSolutionException.java | 6 +- .../math4/optimization/linear/package-info.java | 2 +- .../math4/optimization/package-info.java | 30 ++-- .../BaseAbstractUnivariateOptimizer.java | 16 +-- .../univariate/BaseUnivariateOptimizer.java | 20 +-- .../optimization/univariate/BracketFinder.java | 16 +-- .../optimization/univariate/BrentOptimizer.java | 14 +- .../SimpleUnivariateValueChecker.java | 10 +- .../UnivariateMultiStartOptimizer.java | 18 +-- .../univariate/UnivariateOptimizer.java | 4 +- .../univariate/UnivariatePointValuePair.java | 2 +- .../optimization/univariate/package-info.java | 2 +- .../org/apache/commons/math4/package-info.java | 2 +- .../apache/commons/math4/primes/PollardRho.java | 4 +- .../org/apache/commons/math4/primes/Primes.java | 6 +- .../commons/math4/primes/SmallPrimes.java | 4 +- .../commons/math4/primes/package-info.java | 2 +- .../math4/random/AbstractRandomGenerator.java | 6 +- .../commons/math4/random/AbstractWell.java | 4 +- .../math4/random/BitsStreamGenerator.java | 6 +- .../random/CorrelatedRandomVectorGenerator.java | 12 +- .../math4/random/EmpiricalDistribution.java | 30 ++-- .../math4/random/GaussianRandomGenerator.java | 2 +- .../math4/random/HaltonSequenceGenerator.java | 12 +- .../commons/math4/random/ISAACRandom.java | 4 +- .../math4/random/JDKRandomGenerator.java | 2 +- .../commons/math4/random/MersenneTwister.java | 4 +- .../math4/random/NormalizedRandomGenerator.java | 2 +- .../commons/math4/random/RandomAdaptor.java | 2 +- .../apache/commons/math4/random/RandomData.java | 10 +- .../math4/random/RandomDataGenerator.java | 50 +++---- .../commons/math4/random/RandomDataImpl.java | 42 +++--- .../commons/math4/random/RandomGenerator.java | 2 +- .../math4/random/RandomGeneratorFactory.java | 5 +- .../math4/random/RandomVectorGenerator.java | 2 +- .../math4/random/SobolSequenceGenerator.java | 16 +-- .../math4/random/StableRandomGenerator.java | 10 +- .../random/SynchronizedRandomGenerator.java | 2 +- .../UncorrelatedRandomVectorGenerator.java | 4 +- .../math4/random/UniformRandomGenerator.java | 4 +- .../random/UnitSphereRandomVectorGenerator.java | 4 +- .../commons/math4/random/ValueServer.java | 12 +- .../apache/commons/math4/random/Well1024a.java | 2 +- .../apache/commons/math4/random/Well19937a.java | 2 +- .../apache/commons/math4/random/Well19937c.java | 2 +- .../apache/commons/math4/random/Well44497a.java | 2 +- .../apache/commons/math4/random/Well44497b.java | 2 +- .../apache/commons/math4/random/Well512a.java | 2 +- .../commons/math4/random/package-info.java | 38 ++--- .../apache/commons/math4/special/BesselJ.java | 18 +-- .../org/apache/commons/math4/special/Beta.java | 18 +-- .../org/apache/commons/math4/special/Erf.java | 8 +- .../org/apache/commons/math4/special/Gamma.java | 12 +- .../commons/math4/special/package-info.java | 2 +- .../apache/commons/math4/stat/Frequency.java | 10 +- .../apache/commons/math4/stat/StatUtils.java | 72 +++++----- .../commons/math4/stat/clustering/Cluster.java | 4 +- .../math4/stat/clustering/Clusterable.java | 4 +- .../math4/stat/clustering/DBSCANClusterer.java | 10 +- .../stat/clustering/EuclideanDoublePoint.java | 6 +- .../stat/clustering/EuclideanIntegerPoint.java | 6 +- .../clustering/KMeansPlusPlusClusterer.java | 16 +-- .../math4/stat/clustering/package-info.java | 4 +- .../math4/stat/correlation/Covariance.java | 16 +-- .../stat/correlation/KendallsCorrelation.java | 14 +- .../stat/correlation/PearsonsCorrelation.java | 22 +-- .../stat/correlation/SpearmansCorrelation.java | 18 +-- .../StorelessBivariateCovariance.java | 6 +- .../stat/correlation/StorelessCovariance.java | 12 +- .../math4/stat/correlation/package-info.java | 2 +- .../AbstractStorelessUnivariateStatistic.java | 20 +-- .../AbstractUnivariateStatistic.java | 14 +- .../descriptive/AggregateSummaryStatistics.java | 4 +- .../stat/descriptive/DescriptiveStatistics.java | 36 ++--- .../MultivariateSummaryStatistics.java | 34 ++--- .../StatisticalMultivariateSummary.java | 4 +- .../stat/descriptive/StatisticalSummary.java | 2 +- .../descriptive/StatisticalSummaryValues.java | 8 +- .../StorelessUnivariateStatistic.java | 4 +- .../stat/descriptive/SummaryStatistics.java | 32 ++--- .../SynchronizedDescriptiveStatistics.java | 10 +- ...nchronizedMultivariateSummaryStatistics.java | 10 +- .../SynchronizedSummaryStatistics.java | 10 +- .../stat/descriptive/UnivariateStatistic.java | 6 +- .../stat/descriptive/WeightedEvaluation.java | 4 +- .../stat/descriptive/moment/FirstMoment.java | 8 +- .../stat/descriptive/moment/FourthMoment.java | 6 +- .../stat/descriptive/moment/GeometricMean.java | 20 +-- .../math4/stat/descriptive/moment/Kurtosis.java | 12 +- .../math4/stat/descriptive/moment/Mean.java | 14 +- .../stat/descriptive/moment/SecondMoment.java | 6 +- .../stat/descriptive/moment/SemiVariance.java | 10 +- .../math4/stat/descriptive/moment/Skewness.java | 12 +- .../descriptive/moment/StandardDeviation.java | 12 +- .../stat/descriptive/moment/ThirdMoment.java | 6 +- .../math4/stat/descriptive/moment/Variance.java | 14 +- .../descriptive/moment/VectorialCovariance.java | 8 +- .../stat/descriptive/moment/VectorialMean.java | 4 +- .../stat/descriptive/moment/package-info.java | 2 +- .../math4/stat/descriptive/package-info.java | 2 +- .../math4/stat/descriptive/rank/Max.java | 10 +- .../math4/stat/descriptive/rank/Median.java | 10 +- .../math4/stat/descriptive/rank/Min.java | 10 +- .../descriptive/rank/PSquarePercentile.java | 26 ++-- .../math4/stat/descriptive/rank/Percentile.java | 30 ++-- .../stat/descriptive/rank/package-info.java | 2 +- .../math4/stat/descriptive/summary/Product.java | 14 +- .../math4/stat/descriptive/summary/Sum.java | 10 +- .../stat/descriptive/summary/SumOfLogs.java | 14 +- .../stat/descriptive/summary/SumOfSquares.java | 10 +- .../stat/descriptive/summary/package-info.java | 2 +- .../stat/inference/AlternativeHypothesis.java | 2 +- .../math4/stat/inference/BinomialTest.java | 16 +-- .../math4/stat/inference/ChiSquareTest.java | 26 ++-- .../commons/math4/stat/inference/GTest.java | 22 +-- .../stat/inference/KolmogorovSmirnovTest.java | 64 ++++----- .../math4/stat/inference/MannWhitneyUTest.java | 22 +-- .../math4/stat/inference/OneWayAnova.java | 30 ++-- .../commons/math4/stat/inference/TTest.java | 32 ++--- .../commons/math4/stat/inference/TestUtils.java | 128 ++++++++--------- .../stat/inference/WilcoxonSignedRankTest.java | 26 ++-- .../math4/stat/inference/package-info.java | 2 +- .../stat/interval/AgrestiCoullInterval.java | 6 +- .../interval/BinomialConfidenceInterval.java | 10 +- .../stat/interval/ClopperPearsonInterval.java | 4 +- .../math4/stat/interval/ConfidenceInterval.java | 6 +- .../math4/stat/interval/IntervalUtils.java | 12 +- .../interval/NormalApproximationInterval.java | 6 +- .../stat/interval/WilsonScoreInterval.java | 6 +- .../math4/stat/interval/package-info.java | 2 +- .../apache/commons/math4/stat/package-info.java | 2 +- .../commons/math4/stat/ranking/NaNStrategy.java | 2 +- .../math4/stat/ranking/NaturalRanking.java | 12 +- .../math4/stat/ranking/RankingAlgorithm.java | 2 +- .../math4/stat/ranking/TiesStrategy.java | 2 +- .../math4/stat/ranking/package-info.java | 2 +- .../AbstractMultipleLinearRegression.java | 28 ++-- .../regression/GLSMultipleLinearRegression.java | 10 +- .../regression/MillerUpdatingRegression.java | 11 +- .../regression/ModelSpecificationException.java | 6 +- .../regression/MultipleLinearRegression.java | 2 +- .../regression/OLSMultipleLinearRegression.java | 28 ++-- .../stat/regression/RegressionResults.java | 9 +- .../math4/stat/regression/SimpleRegression.java | 18 +-- .../UpdatingMultipleLinearRegression.java | 6 +- .../math4/stat/regression/package-info.java | 2 +- .../math4/transform/DctNormalization.java | 2 +- .../math4/transform/DftNormalization.java | 2 +- .../math4/transform/DstNormalization.java | 2 +- .../math4/transform/FastCosineTransformer.java | 20 +-- .../math4/transform/FastFourierTransformer.java | 26 ++-- .../transform/FastHadamardTransformer.java | 16 +-- .../math4/transform/FastSineTransformer.java | 20 +-- .../math4/transform/RealTransformer.java | 12 +- .../commons/math4/transform/TransformType.java | 2 +- .../commons/math4/transform/TransformUtils.java | 10 +- .../commons/math4/transform/package-info.java | 2 +- .../commons/math4/util/ArithmeticUtils.java | 12 +- .../org/apache/commons/math4/util/BigReal.java | 10 +- .../apache/commons/math4/util/BigRealField.java | 6 +- .../math4/util/CentralPivotingStrategy.java | 4 +- .../apache/commons/math4/util/Combinations.java | 17 +-- .../commons/math4/util/CombinatoricsUtils.java | 10 +- .../commons/math4/util/CompositeFormat.java | 2 +- .../commons/math4/util/ContinuedFraction.java | 8 +- .../apache/commons/math4/util/Decimal64.java | 8 +- .../commons/math4/util/Decimal64Field.java | 6 +- .../commons/math4/util/DefaultTransformer.java | 8 +- .../apache/commons/math4/util/DoubleArray.java | 2 +- .../org/apache/commons/math4/util/FastMath.java | 6 +- .../apache/commons/math4/util/FastMathCalc.java | 4 +- .../math4/util/FastMathLiteralArrays.java | 2 +- .../apache/commons/math4/util/Incrementor.java | 6 +- .../commons/math4/util/IterationEvent.java | 2 +- .../commons/math4/util/IterationListener.java | 2 +- .../commons/math4/util/IterationManager.java | 6 +- .../apache/commons/math4/util/KthSelector.java | 4 +- .../apache/commons/math4/util/MathArrays.java | 34 ++--- .../apache/commons/math4/util/MathUtils.java | 12 +- .../math4/util/MedianOf3PivotingStrategy.java | 4 +- .../math4/util/MultidimensionalCounter.java | 9 +- .../commons/math4/util/NumberTransformer.java | 4 +- .../math4/util/OpenIntToDoubleHashMap.java | 2 +- .../math4/util/OpenIntToFieldHashMap.java | 6 +- .../org/apache/commons/math4/util/Pair.java | 2 +- .../math4/util/PivotingStrategyInterface.java | 4 +- .../apache/commons/math4/util/Precision.java | 8 +- .../math4/util/RandomPivotingStrategy.java | 6 +- .../math4/util/ResizableDoubleArray.java | 16 +-- .../commons/math4/util/TransformerMap.java | 6 +- .../apache/commons/math4/util/package-info.java | 2 +- src/site/apt/userguide/special.apt | 6 +- src/site/design/differentiation.puml | 2 +- src/site/design/oneD.puml | 2 +- src/site/design/partitioning.puml | 2 +- src/site/design/solver.puml | 2 +- src/site/design/threeD.puml | 2 +- src/site/design/twoD.puml | 2 +- src/site/xdoc/proposal.xml | 2 +- src/site/xdoc/userguide/analysis.xml | 136 +++++++++--------- src/site/xdoc/userguide/complex.xml | 10 +- src/site/xdoc/userguide/distribution.xml | 22 +-- src/site/xdoc/userguide/exceptions.xml | 14 +- src/site/xdoc/userguide/filter.xml | 6 +- src/site/xdoc/userguide/fitting.xml | 26 ++-- src/site/xdoc/userguide/fraction.xml | 6 +- src/site/xdoc/userguide/genetics.xml | 28 ++-- src/site/xdoc/userguide/geometry.xml | 30 ++-- src/site/xdoc/userguide/linear.xml | 34 ++--- src/site/xdoc/userguide/ml.xml | 22 +-- src/site/xdoc/userguide/ode.xml | 62 ++++---- src/site/xdoc/userguide/optimization.xml | 58 ++++---- src/site/xdoc/userguide/overview.xml | 38 ++--- src/site/xdoc/userguide/random.xml | 66 ++++----- src/site/xdoc/userguide/stat.xml | 112 +++++++-------- src/site/xdoc/userguide/transform.xml | 8 +- src/site/xdoc/userguide/utilities.xml | 18 +-- src/test/R/KolmogorovSmirnovTestCases.R | 2 +- src/test/R/LevyDistributionTestCases.R | 2 +- src/test/R/gumbelTestCases.R | 2 +- src/test/R/laplaceTestCases.R | 2 +- src/test/R/logisticsTestCases.R | 2 +- src/test/R/nakagamiTestCases.R | 2 +- .../math4/ExtendedFieldElementAbstractTest.java | 11 +- .../org/apache/commons/math4/PerfTestUtils.java | 11 +- .../java/org/apache/commons/math4/Retry.java | 2 +- .../org/apache/commons/math4/RetryRunner.java | 2 +- .../apache/commons/math4/RetryRunnerTest.java | 5 +- .../org/apache/commons/math4/TestUtils.java | 22 +-- .../math4/analysis/FunctionUtilsTest.java | 55 +++---- .../math4/analysis/MonitoredFunction.java | 4 +- .../commons/math4/analysis/QuinticFunction.java | 8 +- .../commons/math4/analysis/SumSincFunction.java | 6 +- .../commons/math4/analysis/XMinus5Function.java | 8 +- .../differentiation/DSCompilerTest.java | 7 +- .../DerivativeStructureTest.java | 21 +-- .../FiniteDifferencesDifferentiatorTest.java | 34 +++-- .../differentiation/GradientFunctionTest.java | 13 +- .../differentiation/JacobianFunctionTest.java | 10 +- .../differentiation/SparseGradientTest.java | 13 +- .../math4/analysis/function/GaussianTest.java | 19 +-- .../function/HarmonicOscillatorTest.java | 15 +- .../math4/analysis/function/LogisticTest.java | 19 +-- .../math4/analysis/function/LogitTest.java | 27 ++-- .../math4/analysis/function/SigmoidTest.java | 12 +- .../math4/analysis/function/SincTest.java | 15 +- .../math4/analysis/function/SqrtTest.java | 12 +- .../analysis/function/StepFunctionTest.java | 14 +- .../IterativeLegendreGaussIntegratorTest.java | 19 +-- .../LegendreGaussIntegratorTest.java | 17 ++- .../integration/MidPointIntegratorTest.java | 16 ++- .../integration/RombergIntegratorTest.java | 16 ++- .../integration/SimpsonIntegratorTest.java | 16 ++- .../integration/TrapezoidIntegratorTest.java | 16 ++- .../integration/gauss/BaseRuleFactoryTest.java | 6 +- .../integration/gauss/GaussIntegratorTest.java | 9 +- .../gauss/GaussianQuadratureAbstractTest.java | 7 +- .../gauss/HermiteParametricTest.java | 6 +- .../analysis/integration/gauss/HermiteTest.java | 9 +- .../LegendreHighPrecisionParametricTest.java | 4 +- .../gauss/LegendreHighPrecisionTest.java | 15 +- .../gauss/LegendreParametricTest.java | 4 +- .../integration/gauss/LegendreTest.java | 15 +- .../AkimaSplineInterpolatorTest.java | 26 ++-- .../BicubicInterpolatingFunctionTest.java | 23 +-- .../interpolation/BicubicInterpolatorTest.java | 19 +-- .../BicubicSplineInterpolatingFunctionTest.java | 20 +-- .../BicubicSplineInterpolatorTest.java | 16 ++- .../DividedDifferenceInterpolatorTest.java | 16 ++- .../FieldHermiteInterpolatorTest.java | 15 +- .../interpolation/HermiteInterpolatorTest.java | 11 +- .../interpolation/LinearInterpolatorTest.java | 20 +-- .../interpolation/LoessInterpolatorTest.java | 20 +-- .../MicrosphereInterpolatorTest.java | 8 +- .../interpolation/NevilleInterpolatorTest.java | 16 ++- ...eBicubicSplineInterpolatingFunctionTest.java | 23 +-- .../PiecewiseBicubicSplineInterpolatorTest.java | 24 ++-- ...PolynomialBicubicSplineInterpolatorTest.java | 14 +- .../interpolation/SplineInterpolatorTest.java | 22 +-- .../TricubicInterpolatingFunctionTest.java | 21 +-- .../interpolation/TricubicInterpolatorTest.java | 14 +- ...TricubicSplineInterpolatingFunctionTest.java | 11 +- .../TricubicSplineInterpolatorTest.java | 14 +- .../UnivariatePeriodicInterpolatorTest.java | 13 +- .../PolynomialFunctionLagrangeFormTest.java | 5 +- .../PolynomialFunctionNewtonFormTest.java | 7 +- .../polynomials/PolynomialFunctionTest.java | 8 +- .../PolynomialSplineFunctionTest.java | 12 +- .../polynomials/PolynomialsUtilsTest.java | 16 ++- .../solvers/BaseSecantSolverAbstractTest.java | 22 +-- .../analysis/solvers/BisectionSolverTest.java | 11 +- .../BracketingNthOrderBrentSolverTest.java | 20 +-- .../math4/analysis/solvers/BrentSolverTest.java | 32 +++-- .../analysis/solvers/IllinoisSolverTest.java | 5 +- .../analysis/solvers/LaguerreSolverTest.java | 17 +-- .../analysis/solvers/MullerSolver2Test.java | 18 +-- .../analysis/solvers/MullerSolverTest.java | 18 +-- .../solvers/NewtonRaphsonSolverTest.java | 11 +- .../analysis/solvers/NewtonSolverTest.java | 19 +-- .../analysis/solvers/PegasusSolverTest.java | 5 +- .../analysis/solvers/RegulaFalsiSolverTest.java | 10 +- .../analysis/solvers/RiddersSolverTest.java | 18 +-- .../analysis/solvers/SecantSolverTest.java | 5 +- .../solvers/UnivariateSolverUtilsTest.java | 17 +-- .../commons/math4/complex/ComplexFieldTest.java | 6 +- .../complex/ComplexFormatAbstractTest.java | 7 +- .../math4/complex/ComplexFormatTest.java | 2 +- .../commons/math4/complex/ComplexTest.java | 25 ++-- .../commons/math4/complex/ComplexUtilsTest.java | 8 +- .../math4/complex/FrenchComplexFormatTest.java | 2 +- .../commons/math4/complex/QuaternionTest.java | 15 +- .../commons/math4/complex/RootsOfUnityTest.java | 9 +- .../BracketingNthOrderBrentSolverDFPTest.java | 15 +- .../org/apache/commons/math4/dfp/Decimal10.java | 6 +- .../apache/commons/math4/dfp/DfpDecTest.java | 5 +- .../apache/commons/math4/dfp/DfpMathTest.java | 5 +- .../org/apache/commons/math4/dfp/DfpTest.java | 10 +- .../AbstractIntegerDistributionTest.java | 3 +- .../AbstractRealDistributionTest.java | 11 +- .../distribution/BetaDistributionTest.java | 3 +- .../distribution/BinomialDistributionTest.java | 4 +- .../distribution/CauchyDistributionTest.java | 6 +- .../ChiSquaredDistributionTest.java | 3 +- .../ConstantRealDistributionTest.java | 4 +- .../EnumeratedIntegerDistributionTest.java | 15 +- .../EnumeratedRealDistributionTest.java | 18 +-- .../ExponentialDistributionTest.java | 9 +- .../math4/distribution/FDistributionTest.java | 5 +- .../distribution/GammaDistributionTest.java | 13 +- .../distribution/GeometricDistributionTest.java | 4 +- .../distribution/GumbelDistributionTest.java | 5 +- .../HypergeometricDistributionTest.java | 14 +- .../IntegerDistributionAbstractTest.java | 10 +- .../KolmogorovSmirnovDistributionTest.java | 3 +- .../distribution/LaplaceDistributionTest.java | 5 +- .../distribution/LevyDistributionTest.java | 7 +- .../distribution/LogNormalDistributionTest.java | 5 +- .../distribution/LogisticsDistributionTest.java | 5 +- .../MultivariateNormalDistributionTest.java | 9 +- ...riateNormalMixtureModelDistributionTest.java | 11 +- .../distribution/NakagamiDistributionTest.java | 5 +- .../distribution/NormalDistributionTest.java | 5 +- .../distribution/ParetoDistributionTest.java | 5 +- .../distribution/PascalDistributionTest.java | 5 +- .../distribution/PoissonDistributionTest.java | 8 +- .../RealDistributionAbstractTest.java | 18 +-- .../math4/distribution/TDistributionTest.java | 7 +- .../TriangularDistributionTest.java | 7 +- .../UniformIntegerDistributionTest.java | 6 +- .../UniformRealDistributionTest.java | 5 +- .../distribution/WeibullDistributionTest.java | 9 +- .../distribution/ZipfDistributionTest.java | 9 +- ...ormalMixtureExpectationMaximizationTest.java | 21 +-- .../DimensionMismatchExceptionTest.java | 3 +- .../MaxCountExceededExceptionTest.java | 3 +- .../NonMonotonicSequenceExceptionTest.java | 6 +- .../exception/NotPositiveExceptionTest.java | 3 +- .../NotStrictlyPositiveExceptionTest.java | 3 +- .../NumberIsTooLargeExceptionTest.java | 3 +- .../NumberIsTooSmallExceptionTest.java | 3 +- .../exception/OutOfRangeExceptionTest.java | 3 +- .../TooManyEvaluationsExceptionTest.java | 3 +- .../math4/exception/util/ArgUtilsTest.java | 3 +- .../exception/util/ExceptionContextTest.java | 4 +- .../exception/util/LocalizedFormatsTest.java | 3 +- .../commons/math4/filter/KalmanFilterTest.java | 33 +++-- .../commons/math4/fitting/CurveFitterTest.java | 9 +- .../math4/fitting/GaussianCurveFitterTest.java | 8 +- .../math4/fitting/GaussianFitterTest.java | 7 +- .../math4/fitting/HarmonicCurveFitterTest.java | 15 +- .../math4/fitting/HarmonicFitterTest.java | 16 ++- .../fitting/PolynomialCurveFitterTest.java | 16 ++- .../math4/fitting/PolynomialFitterTest.java | 28 ++-- .../math4/fitting/SimpleCurveFitterTest.java | 18 +-- .../fitting/WeightedObservedPointsTest.java | 7 +- ...stractLeastSquaresOptimizerAbstractTest.java | 42 +++--- .../fitting/leastsquares/CircleProblem.java | 11 +- .../fitting/leastsquares/CircleVectorial.java | 9 +- .../leastsquares/EvaluationRmsCheckerTest.java | 11 +- .../fitting/leastsquares/EvaluationTest.java | 37 ++--- .../leastsquares/EvaluationTestValidation.java | 20 +-- .../GaussNewtonOptimizerWithCholeskyTest.java | 13 +- .../GaussNewtonOptimizerWithLUTest.java | 13 +- .../GaussNewtonOptimizerWithQRTest.java | 13 +- .../GaussNewtonOptimizerWithSVDTest.java | 23 +-- .../LevenbergMarquardtOptimizerTest.java | 37 ++--- .../math4/fitting/leastsquares/MinpackTest.java | 18 ++- .../RandomCirclePointGenerator.java | 18 +-- .../RandomStraightLinePointGenerator.java | 13 +- .../StatisticalReferenceDataset.java | 9 +- .../StatisticalReferenceDatasetFactory.java | 5 +- .../leastsquares/StraightLineProblem.java | 11 +- .../math4/fraction/BigFractionFieldTest.java | 6 +- .../math4/fraction/BigFractionFormatTest.java | 9 +- .../commons/math4/fraction/BigFractionTest.java | 16 ++- .../math4/fraction/FractionFieldTest.java | 6 +- .../math4/fraction/FractionFormatTest.java | 9 +- .../commons/math4/fraction/FractionTest.java | 16 ++- .../math4/genetics/BinaryChromosomeTest.java | 4 +- .../math4/genetics/BinaryMutationTest.java | 4 +- .../commons/math4/genetics/ChromosomeTest.java | 5 +- .../math4/genetics/CycleCrossoverTest.java | 13 +- .../math4/genetics/DummyBinaryChromosome.java | 5 +- .../math4/genetics/DummyListChromosome.java | 5 +- .../commons/math4/genetics/DummyRandomKey.java | 5 +- .../genetics/ElitisticListPopulationTest.java | 7 +- .../math4/genetics/FitnessCachingTest.java | 12 +- .../math4/genetics/FixedElapsedTimeTest.java | 7 +- .../genetics/FixedGenerationCountTest.java | 5 +- .../genetics/GeneticAlgorithmTestBinary.java | 13 +- .../GeneticAlgorithmTestPermutations.java | 15 +- .../math4/genetics/ListPopulationTest.java | 12 +- .../math4/genetics/NPointCrossoverTest.java | 13 +- .../math4/genetics/OnePointCrossoverTest.java | 5 +- .../math4/genetics/OrderedCrossoverTest.java | 11 +- .../math4/genetics/RandomKeyMutationTest.java | 6 +- .../commons/math4/genetics/RandomKeyTest.java | 3 +- .../math4/genetics/TournamentSelectionTest.java | 6 +- .../math4/genetics/UniformCrossoverTest.java | 14 +- .../geometry/enclosing/WelzlEncloser2DTest.java | 14 +- .../geometry/enclosing/WelzlEncloser3DTest.java | 16 ++- .../euclidean/oned/Euclidean1DTest.java | 7 +- .../oned/FrenchVector1DFormatTest.java | 2 +- .../geometry/euclidean/oned/IntervalTest.java | 9 +- .../euclidean/oned/IntervalsSetTest.java | 17 +-- .../oned/Vector1DFormatAbstractTest.java | 6 +- .../euclidean/oned/Vector1DFormatTest.java | 2 +- .../geometry/euclidean/oned/Vector1DTest.java | 13 +- .../euclidean/threed/Euclidean3DTest.java | 9 +- .../euclidean/threed/FieldRotationDSTest.java | 29 ++-- .../euclidean/threed/FieldRotationDfpTest.java | 27 ++-- .../euclidean/threed/FieldVector3DTest.java | 16 ++- .../threed/FrenchVector3DFormatTest.java | 2 +- .../geometry/euclidean/threed/LineTest.java | 12 +- .../geometry/euclidean/threed/PlaneTest.java | 16 +-- .../euclidean/threed/PolyhedronsSetTest.java | 36 +++-- .../euclidean/threed/RotationOrderTest.java | 4 +- .../geometry/euclidean/threed/RotationTest.java | 17 ++- .../euclidean/threed/SphereGeneratorTest.java | 15 +- .../threed/SphericalCoordinatesTest.java | 14 +- .../geometry/euclidean/threed/SubLineTest.java | 14 +- .../threed/Vector3DFormatAbstractTest.java | 8 +- .../euclidean/threed/Vector3DFormatTest.java | 2 +- .../geometry/euclidean/threed/Vector3DTest.java | 18 +-- .../euclidean/twod/DiskGeneratorTest.java | 13 +- .../euclidean/twod/Euclidean2DTest.java | 10 +- .../twod/FrenchVector2DFormatTest.java | 2 +- .../math4/geometry/euclidean/twod/LineTest.java | 21 +-- .../euclidean/twod/PolygonsSetTest.java | 31 ++-- .../geometry/euclidean/twod/SegmentTest.java | 9 +- .../geometry/euclidean/twod/SubLineTest.java | 12 +- .../twod/Vector2DFormatAbstractTest.java | 6 +- .../euclidean/twod/Vector2DFormatTest.java | 2 +- .../geometry/euclidean/twod/Vector2DTest.java | 3 +- .../twod/hull/AklToussaintHeuristicTest.java | 7 +- .../hull/ConvexHullGenerator2DAbstractTest.java | 24 ++-- .../euclidean/twod/hull/MonotoneChainTest.java | 9 +- .../partitioning/utilities/AVLTreeTest.java | 4 +- .../math4/geometry/spherical/oned/ArcTest.java | 13 +- .../geometry/spherical/oned/ArcsSetTest.java | 28 ++-- .../geometry/spherical/oned/LimitAngleTest.java | 6 +- .../geometry/spherical/oned/S1PointTest.java | 10 +- .../geometry/spherical/oned/Sphere1Test.java | 7 +- .../geometry/spherical/twod/CircleTest.java | 33 +++-- .../geometry/spherical/twod/S2PointTest.java | 12 +- .../twod/SphericalPolygonsSetTest.java | 33 +++-- .../geometry/spherical/twod/SubCircleTest.java | 23 +-- .../math4/linear/Array2DRowRealMatrixTest.java | 31 ++-- .../math4/linear/ArrayFieldVectorTest.java | 23 +-- .../math4/linear/ArrayRealVectorTest.java | 6 +- .../math4/linear/BiDiagonalTransformerTest.java | 10 +- .../math4/linear/BlockFieldMatrixTest.java | 30 ++-- .../math4/linear/BlockRealMatrixTest.java | 26 ++-- .../math4/linear/CholeskyDecompositionTest.java | 10 +- .../math4/linear/CholeskySolverTest.java | 8 +- .../math4/linear/ConjugateGradientTest.java | 25 +++- .../math4/linear/DiagonalMatrixTest.java | 22 +-- .../math4/linear/EigenDecompositionTest.java | 20 ++- .../commons/math4/linear/EigenSolverTest.java | 12 +- .../math4/linear/FieldLUDecompositionTest.java | 13 +- .../commons/math4/linear/FieldLUSolverTest.java | 15 +- .../math4/linear/FieldMatrixImplTest.java | 34 +++-- .../linear/FrenchRealVectorFormatTest.java | 2 +- .../math4/linear/HessenbergTransformerTest.java | 8 +- .../commons/math4/linear/HilbertMatrix.java | 7 +- .../math4/linear/InverseHilbertMatrix.java | 11 +- .../math4/linear/LUDecompositionTest.java | 6 +- .../commons/math4/linear/LUSolverTest.java | 10 +- .../MatrixDimensionMismatchExceptionTest.java | 3 +- .../commons/math4/linear/MatrixUtilsTest.java | 30 ++-- .../math4/linear/OpenMapRealMatrixTest.java | 5 +- .../math4/linear/QRDecompositionTest.java | 12 +- .../commons/math4/linear/QRSolverTest.java | 13 +- .../math4/linear/RRQRDecompositionTest.java | 10 +- .../commons/math4/linear/RRQRSolverTest.java | 13 +- .../linear/RealMatrixFormatAbstractTest.java | 8 +- .../math4/linear/RealMatrixFormatTest.java | 2 +- .../math4/linear/RealVectorAbstractTest.java | 73 +++++----- .../linear/RealVectorFormatAbstractTest.java | 7 +- .../math4/linear/RealVectorFormatTest.java | 2 +- .../commons/math4/linear/RealVectorTest.java | 5 +- .../RectangularCholeskyDecompositionTest.java | 5 +- .../math4/linear/SchurTransformerTest.java | 8 +- .../linear/SingularValueDecompositionTest.java | 6 +- .../math4/linear/SingularValueSolverTest.java | 13 +- .../math4/linear/SparseFieldMatrixTest.java | 28 ++-- .../math4/linear/SparseFieldVectorTest.java | 19 ++- .../math4/linear/SparseRealMatrixTest.java | 22 +-- .../math4/linear/SparseRealVectorTest.java | 48 ++++--- .../apache/commons/math4/linear/SymmLQTest.java | 24 +++- .../linear/TriDiagonalTransformerTest.java | 9 +- .../linear/UnmodifiableArrayRealVectorTest.java | 5 +- .../UnmodifiableOpenMapRealVectorTest.java | 6 +- .../UnmodifiableRealVectorAbstractTest.java | 15 +- .../ml/clustering/DBSCANClustererTest.java | 9 +- .../ml/clustering/FuzzyKMeansClustererTest.java | 18 ++- .../clustering/KMeansPlusPlusClustererTest.java | 14 +- .../MultiKMeansPlusPlusClustererTest.java | 7 +- .../evaluation/SumOfClusterVariancesTest.java | 10 +- .../math4/ml/distance/CanberraDistanceTest.java | 4 +- .../ml/distance/ChebyshevDistanceTest.java | 4 +- .../ml/distance/EarthMoversDistanceTest.java | 6 +- .../ml/distance/EuclideanDistanceTest.java | 6 +- .../ml/distance/ManhattanDistanceTest.java | 4 +- .../math4/ml/neuralnet/MapUtilsTest.java | 14 +- .../commons/math4/ml/neuralnet/NetworkTest.java | 9 +- .../commons/math4/ml/neuralnet/NeuronTest.java | 4 +- .../ml/neuralnet/OffsetFeatureInitializer.java | 4 +- .../ml/neuralnet/oned/NeuronStringTest.java | 11 +- .../neuralnet/sofm/KohonenTrainingTaskTest.java | 9 +- .../neuralnet/sofm/KohonenUpdateActionTest.java | 27 ++-- .../sofm/LearningFactorFunctionFactoryTest.java | 10 +- .../NeighbourhoodSizeFunctionFactoryTest.java | 8 +- .../sofm/TravellingSalesmanSolver.java | 43 +++--- .../sofm/util/ExponentialDecayFunctionTest.java | 7 +- .../util/QuasiSigmoidDecayFunctionTest.java | 7 +- .../neuralnet/twod/NeuronSquareMesh2DTest.java | 15 +- .../math4/ode/ContinuousOutputModelTest.java | 25 ++-- .../math4/ode/FirstOrderConverterTest.java | 18 +-- .../commons/math4/ode/JacobianMatricesTest.java | 30 ++-- .../apache/commons/math4/ode/TestProblem1.java | 4 +- .../apache/commons/math4/ode/TestProblem2.java | 4 +- .../apache/commons/math4/ode/TestProblem3.java | 4 +- .../apache/commons/math4/ode/TestProblem4.java | 6 +- .../apache/commons/math4/ode/TestProblem5.java | 2 +- .../apache/commons/math4/ode/TestProblem6.java | 2 +- .../commons/math4/ode/TestProblemAbstract.java | 6 +- .../commons/math4/ode/TestProblemFactory.java | 2 +- .../commons/math4/ode/TestProblemHandler.java | 11 +- .../math4/ode/events/EventFilterTest.java | 29 ++-- .../math4/ode/events/EventStateTest.java | 30 ++-- .../math4/ode/events/OverlappingEventsTest.java | 27 ++-- .../math4/ode/events/ReappearingEventTest.java | 22 +-- .../nonstiff/AdamsBashforthIntegratorTest.java | 27 ++-- .../nonstiff/AdamsMoultonIntegratorTest.java | 27 ++-- .../ClassicalRungeKuttaIntegratorTest.java | 40 +++--- ...ClassicalRungeKuttaStepInterpolatorTest.java | 19 +-- .../nonstiff/DormandPrince54IntegratorTest.java | 37 ++--- .../DormandPrince54StepInterpolatorTest.java | 23 +-- .../DormandPrince853IntegratorTest.java | 36 ++--- .../DormandPrince853StepInterpolatorTest.java | 23 +-- .../math4/ode/nonstiff/EulerIntegratorTest.java | 37 ++--- .../ode/nonstiff/EulerStepInterpolatorTest.java | 28 ++-- .../math4/ode/nonstiff/GillIntegratorTest.java | 39 ++--- .../ode/nonstiff/GillStepInterpolatorTest.java | 19 +-- .../GraggBulirschStoerIntegratorTest.java | 38 ++--- .../GraggBulirschStoerStepInterpolatorTest.java | 23 +-- .../nonstiff/HighamHall54IntegratorTest.java | 35 ++--- .../HighamHall54StepInterpolatorTest.java | 23 +-- .../ode/nonstiff/LutherIntegratorTest.java | 40 +++--- .../nonstiff/LutherStepInterpolatorTest.java | 19 +-- .../ode/nonstiff/MidpointIntegratorTest.java | 37 ++--- .../nonstiff/MidpointStepInterpolatorTest.java | 21 +-- .../commons/math4/ode/nonstiff/StepProblem.java | 6 +- .../nonstiff/ThreeEighthesIntegratorTest.java | 39 ++--- .../ThreeEighthesStepInterpolatorTest.java | 19 +-- .../ode/sampling/DummyStepInterpolator.java | 9 +- .../ode/sampling/DummyStepInterpolatorTest.java | 7 +- .../sampling/NordsieckStepInterpolatorTest.java | 19 +-- .../ode/sampling/StepInterpolatorTestUtils.java | 22 +-- .../StepNormalizerOutputOverlapTest.java | 2 +- .../ode/sampling/StepNormalizerOutputTest.java | 2 +- .../sampling/StepNormalizerOutputTestBase.java | 20 +-- .../math4/ode/sampling/StepNormalizerTest.java | 20 +-- .../commons/math4/optim/PointValuePairTest.java | 5 +- .../math4/optim/PointVectorValuePairTest.java | 5 +- .../math4/optim/SimplePointCheckerTest.java | 6 +- .../math4/optim/SimpleValueCheckerTest.java | 6 +- .../optim/SimpleVectorValueCheckerTest.java | 6 +- .../math4/optim/linear/SimplexSolverTest.java | 22 ++- .../math4/optim/linear/SimplexTableauTest.java | 11 +- .../MultiStartMultivariateOptimizerTest.java | 34 +++-- .../MultivariateFunctionMappingAdapterTest.java | 21 +-- .../MultivariateFunctionPenaltyAdapterTest.java | 23 +-- .../nonlinear/scalar/gradient/CircleScalar.java | 12 +- ...NonLinearConjugateGradientOptimizerTest.java | 34 ++--- .../scalar/noderiv/BOBYQAOptimizerTest.java | 27 ++-- .../scalar/noderiv/CMAESOptimizerTest.java | 35 ++--- .../scalar/noderiv/PowellOptimizerTest.java | 25 ++-- .../SimplexOptimizerMultiDirectionalTest.java | 25 ++-- .../noderiv/SimplexOptimizerNelderMeadTest.java | 36 ++--- ...ltiStartMultivariateVectorOptimizerTest.java | 40 +++--- ...stractLeastSquaresOptimizerAbstractTest.java | 33 ++--- .../AbstractLeastSquaresOptimizerTest.java | 15 +- ...ractLeastSquaresOptimizerTestValidation.java | 21 +-- .../vector/jacobian/CircleProblem.java | 14 +- .../vector/jacobian/CircleVectorial.java | 12 +- .../jacobian/GaussNewtonOptimizerTest.java | 22 +-- .../LevenbergMarquardtOptimizerTest.java | 38 ++--- .../nonlinear/vector/jacobian/MinpackTest.java | 25 ++-- .../jacobian/RandomCirclePointGenerator.java | 18 +-- .../RandomStraightLinePointGenerator.java | 12 +- .../jacobian/StatisticalReferenceDataset.java | 12 +- .../StatisticalReferenceDatasetFactory.java | 4 +- .../vector/jacobian/StraightLineProblem.java | 14 +- .../optim/univariate/BracketFinderTest.java | 7 +- .../optim/univariate/BrentOptimizerTest.java | 34 +++-- .../MultiStartUnivariateOptimizerTest.java | 24 ++-- .../SimpleUnivariateValueCheckerTest.java | 6 +- ...teDifferentiableMultiStartOptimizerTest.java | 26 ++-- ...erentiableVectorMultiStartOptimizerTest.java | 31 ++-- .../MultivariateMultiStartOptimizerTest.java | 20 +-- .../math4/optimization/PointValuePairTest.java | 5 +- .../optimization/PointVectorValuePairTest.java | 5 +- .../optimization/SimplePointCheckerTest.java | 6 +- .../optimization/SimpleValueCheckerTest.java | 6 +- .../SimpleVectorValueCheckerTest.java | 6 +- .../direct/BOBYQAOptimizerTest.java | 23 +-- .../optimization/direct/CMAESOptimizerTest.java | 31 ++-- .../MultivariateFunctionMappingAdapterTest.java | 11 +- .../MultivariateFunctionPenaltyAdapterTest.java | 13 +- .../direct/PowellOptimizerTest.java | 17 +-- .../SimplexOptimizerMultiDirectionalTest.java | 16 ++- .../direct/SimplexOptimizerNelderMeadTest.java | 26 ++-- .../optimization/fitting/CurveFitterTest.java | 9 +- .../fitting/GaussianFitterTest.java | 7 +- .../fitting/HarmonicFitterTest.java | 16 ++- .../fitting/PolynomialFitterTest.java | 28 ++-- ...stractLeastSquaresOptimizerAbstractTest.java | 23 +-- .../AbstractLeastSquaresOptimizerTest.java | 7 +- ...ractLeastSquaresOptimizerTestValidation.java | 13 +- .../optimization/general/CircleProblem.java | 10 +- .../optimization/general/CircleScalar.java | 8 +- .../optimization/general/CircleVectorial.java | 8 +- .../general/GaussNewtonOptimizerTest.java | 10 +- .../LevenbergMarquardtOptimizerTest.java | 24 ++-- .../math4/optimization/general/MinpackTest.java | 13 +- ...NonLinearConjugateGradientOptimizerTest.java | 23 +-- .../general/RandomCirclePointGenerator.java | 18 +-- .../RandomStraightLinePointGenerator.java | 12 +- .../general/StatisticalReferenceDataset.java | 8 +- .../StatisticalReferenceDatasetFactory.java | 4 +- .../general/StraightLineProblem.java | 10 +- .../optimization/linear/SimplexSolverTest.java | 14 +- .../optimization/linear/SimplexTableauTest.java | 10 +- .../univariate/BracketFinderTest.java | 7 +- .../univariate/BrentOptimizerTest.java | 34 +++-- .../SimpleUnivariateValueCheckerTest.java | 6 +- .../UnivariateMultiStartOptimizerTest.java | 18 ++- .../apache/commons/math4/primes/PrimesTest.java | 8 +- .../random/AbstractRandomGeneratorTest.java | 4 +- .../math4/random/BitsStreamGeneratorTest.java | 5 +- .../CorrelatedRandomVectorGeneratorTest.java | 24 ++-- .../math4/random/EmpiricalDistributionTest.java | 28 ++-- .../random/GaussianRandomGeneratorTest.java | 7 +- .../random/HaltonSequenceGeneratorTest.java | 10 +- .../apache/commons/math4/random/ISAACTest.java | 4 +- .../math4/random/MersenneTwisterTest.java | 4 +- .../commons/math4/random/RandomAdaptorTest.java | 4 +- .../math4/random/RandomDataGeneratorTest.java | 55 +++---- .../random/RandomGeneratorAbstractTest.java | 15 +- .../random/RandomGeneratorFactoryTest.java | 5 +- .../random/SobolSequenceGeneratorTest.java | 7 +- .../math4/random/StableRandomGeneratorTest.java | 11 +- .../random/SynchronizedRandomGeneratorTest.java | 5 +- .../math4/random/TestRandomGenerator.java | 4 +- .../UncorrelatedRandomVectorGeneratorTest.java | 13 +- .../random/UniformRandomGeneratorTest.java | 7 +- .../UnitSphereRandomVectorGeneratorTest.java | 7 +- .../commons/math4/random/ValueServerTest.java | 12 +- .../commons/math4/random/Well1024aTest.java | 5 +- .../commons/math4/random/Well19937aTest.java | 4 +- .../commons/math4/random/Well19937cTest.java | 4 +- .../commons/math4/random/Well44497aTest.java | 4 +- .../commons/math4/random/Well44497bTest.java | 4 +- .../commons/math4/random/Well512aTest.java | 4 +- .../commons/math4/special/BesselJTest.java | 5 +- .../apache/commons/math4/special/BetaTest.java | 13 +- .../apache/commons/math4/special/ErfTest.java | 8 +- .../apache/commons/math4/special/GammaTest.java | 11 +- .../commons/math4/stat/CertifiedDataTest.java | 7 +- .../commons/math4/stat/FrequencyTest.java | 8 +- .../commons/math4/stat/StatUtilsTest.java | 13 +- .../stat/clustering/DBSCANClustererTest.java | 10 +- .../clustering/EuclideanDoublePointTest.java | 7 +- .../clustering/EuclideanIntegerPointTest.java | 7 +- .../clustering/KMeansPlusPlusClustererTest.java | 8 +- .../math4/stat/correlation/CovarianceTest.java | 15 +- .../correlation/KendallsCorrelationTest.java | 9 +- .../correlation/PearsonsCorrelationTest.java | 14 +- .../SpearmansRankCorrelationTest.java | 15 +- .../correlation/StorelessCovarianceTest.java | 12 +- .../stat/data/CertifiedDataAbstractTest.java | 9 +- .../apache/commons/math4/stat/data/LewTest.java | 4 +- .../commons/math4/stat/data/LotteryTest.java | 4 +- .../AbstractUnivariateStatisticTest.java | 6 +- .../AggregateSummaryStatisticsTest.java | 19 +-- .../descriptive/DescriptiveStatisticsTest.java | 26 ++-- .../stat/descriptive/ListUnivariateImpl.java | 14 +- .../descriptive/ListUnivariateImplTest.java | 8 +- .../MixedListUnivariateImplTest.java | 10 +- .../MultivariateSummaryStatisticsTest.java | 13 +- .../StatisticalSummaryValuesTest.java | 6 +- ...torelessUnivariateStatisticAbstractTest.java | 10 +- .../stat/descriptive/SummaryStatisticsTest.java | 17 +-- .../SynchronizedDescriptiveStatisticsTest.java | 5 +- ...onizedMultivariateSummaryStatisticsTest.java | 5 +- .../SynchronizedSummaryStatisticsTest.java | 5 +- .../UnivariateStatisticAbstractTest.java | 17 +-- .../descriptive/moment/FirstMomentTest.java | 11 +- .../descriptive/moment/FourthMomentTest.java | 11 +- .../descriptive/moment/GeometricMeanTest.java | 7 +- .../descriptive/moment/InteractionTest.java | 7 +- .../stat/descriptive/moment/KurtosisTest.java | 7 +- .../math4/stat/descriptive/moment/MeanTest.java | 7 +- .../descriptive/moment/SecondMomentTest.java | 11 +- .../descriptive/moment/SemiVarianceTest.java | 9 +- .../stat/descriptive/moment/SkewnessTest.java | 7 +- .../moment/StandardDeviationTest.java | 11 +- .../descriptive/moment/ThirdMomentTest.java | 11 +- .../stat/descriptive/moment/VarianceTest.java | 12 +- .../moment/VectorialCovarianceTest.java | 10 +- .../descriptive/moment/VectorialMeanTest.java | 8 +- .../math4/stat/descriptive/rank/MaxTest.java | 7 +- .../math4/stat/descriptive/rank/MedianTest.java | 33 ++--- .../math4/stat/descriptive/rank/MinTest.java | 7 +- .../descriptive/rank/PSquarePercentileTest.java | 28 ++-- .../stat/descriptive/rank/PercentileTest.java | 41 +++--- .../stat/descriptive/summary/ProductTest.java | 9 +- .../stat/descriptive/summary/SumLogTest.java | 9 +- .../stat/descriptive/summary/SumSqTest.java | 9 +- .../math4/stat/descriptive/summary/SumTest.java | 9 +- .../math4/stat/inference/BinomialTestTest.java | 8 +- .../math4/stat/inference/ChiSquareTestTest.java | 17 +-- .../commons/math4/stat/inference/GTestTest.java | 17 +-- .../inference/KolmogorovSmirnovTestTest.java | 11 +- .../stat/inference/MannWhitneyUTestTest.java | 7 +- .../math4/stat/inference/OneWayAnovaTest.java | 7 +- .../commons/math4/stat/inference/TTestTest.java | 11 +- .../math4/stat/inference/TestUtilsTest.java | 26 ++-- .../inference/WilcoxonSignedRankTestTest.java | 11 +- .../stat/interval/AgrestiCoullIntervalTest.java | 8 +- .../BinomialConfidenceIntervalAbstractTest.java | 8 +- .../interval/ClopperPearsonIntervalTest.java | 8 +- .../math4/stat/interval/IntervalUtilsTest.java | 8 +- .../NormalApproximationIntervalTest.java | 8 +- .../stat/interval/WilsonScoreIntervalTest.java | 8 +- .../math4/stat/ranking/NaturalRankingTest.java | 14 +- .../GLSMultipleLinearRegressionTest.java | 24 ++-- .../MillerUpdatingRegressionTest.java | 15 +- .../MultipleLinearRegressionAbstractTest.java | 8 +- .../OLSMultipleLinearRegressionTest.java | 19 +-- .../stat/regression/SimpleRegressionTest.java | 14 +- .../transform/FastCosineTransformerTest.java | 17 ++- .../transform/FastFourierTransformerTest.java | 22 +-- .../transform/FastHadamardTransformerTest.java | 8 +- .../transform/FastSineTransformerTest.java | 19 ++- .../transform/RealTransformerAbstractTest.java | 14 +- .../commons/math4/util/ArithmeticUtilsTest.java | 9 +- .../commons/math4/util/BigRealFieldTest.java | 6 +- .../apache/commons/math4/util/BigRealTest.java | 8 +- .../commons/math4/util/CombinationsTest.java | 11 +- .../math4/util/CombinatoricsUtilsTest.java | 13 +- .../math4/util/ContinuedFractionTest.java | 3 +- .../commons/math4/util/Decimal64Test.java | 6 +- .../math4/util/DefaultTransformerTest.java | 10 +- .../math4/util/DoubleArrayAbstractTest.java | 5 +- .../util/FastMathStrictComparisonTest.java | 6 +- .../apache/commons/math4/util/FastMathTest.java | 20 +-- .../math4/util/FastMathTestPerformance.java | 5 +- .../commons/math4/util/IncrementorTest.java | 7 +- .../commons/math4/util/MathArraysTest.java | 27 ++-- .../commons/math4/util/MathUtilsTest.java | 20 +-- .../math4/util/MultidimensionalCounterTest.java | 10 +- .../math4/util/OpenIntToDoubleHashMapTest.java | 4 +- .../commons/math4/util/OpenIntToFieldTest.java | 11 +- .../org/apache/commons/math4/util/PairTest.java | 3 +- .../commons/math4/util/PrecisionTest.java | 10 +- .../math4/util/ResizableDoubleArrayTest.java | 9 +- .../org/apache/commons/math4/util/TestBean.java | 6 +- .../commons/math4/util/TransformerMapTest.java | 7 +- .../special/RealFunctionValidation/README.txt | 4 +- .../RealFunctionValidation.java | 4 +- .../RealFunctionValidation.sh | 8 +- .../maxima/special/reference/gamma.properties | 2 +- .../maxima/special/reference/logBeta.properties | 2 +- .../special/reference/logGamma.properties | 2 +- src/userguide/README | 4 +- .../userguide/ClusterAlgorithmComparison.java | 36 ++--- .../commons/math4/userguide/ExampleUtils.java | 2 +- .../LowDiscrepancyGeneratorComparison.java | 26 ++-- .../userguide/RealDistributionComparison.java | 36 ++--- .../userguide/filter/CannonballExample.java | 28 ++-- .../filter/ConstantVoltageExample.java | 28 ++-- .../userguide/genetics/HelloWorldExample.java | 28 ++-- .../genetics/ImageEvolutionExample.java | 18 +-- .../math4/userguide/genetics/Polygon.java | 8 +- .../userguide/genetics/PolygonChromosome.java | 8 +- .../genetics/RandomPolygonMutation.java | 6 +- .../userguide/geometry/GeometryExample.java | 32 ++--- .../math4/userguide/sofm/ChineseRings.java | 12 +- .../userguide/sofm/ChineseRingsClassifier.java | 40 +++--- src/userguide/pom.xml | 26 +--- 1555 files changed, 10146 insertions(+), 8936 deletions(-) ----------------------------------------------------------------------
