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The following commit(s) were added to refs/heads/main by this push:
new c56b107 Add FHIR example
c56b107 is described below
commit c56b1074242eccb100ab0fac76497210e822c78c
Author: James Netherton <jamesnether...@users.noreply.github.com>
AuthorDate: Wed Oct 9 07:09:59 2024 +0100
Add FHIR example
Co-authored-by: Phillip Kruger <phillip.kru...@gmail.com>
---
docs/modules/ROOT/attachments/examples.json | 5 +
fhir/README.adoc | 263 +++++++++++++
fhir/eclipse-formatter-config.xml | 276 ++++++++++++++
fhir/pom.xml | 407 +++++++++++++++++++++
fhir/src/main/docker/Dockerfile.jvm | 113 ++++++
fhir/src/main/docker/Dockerfile.legacy-jar | 109 ++++++
fhir/src/main/docker/Dockerfile.native | 43 +++
fhir/src/main/docker/Dockerfile.native-micro | 46 +++
fhir/src/main/java/org/acme/fhir/Routes.java | 128 +++++++
fhir/src/main/kubernetes/kubernetes.yml | 112 ++++++
fhir/src/main/kubernetes/openshift.yml | 112 ++++++
fhir/src/main/resources/application.properties | 46 +++
fhir/src/test/java/org/acme/fhir/FHIRIT.java | 23 ++
fhir/src/test/java/org/acme/fhir/FHIRTest.java | 62 ++++
.../test/java/org/acme/fhir/FHIRTestResource.java | 51 +++
fhir/src/test/resources/data/hl7v2.patient | 1 +
16 files changed, 1797 insertions(+)
diff --git a/docs/modules/ROOT/attachments/examples.json
b/docs/modules/ROOT/attachments/examples.json
index a9d089c..5487d2f 100644
--- a/docs/modules/ROOT/attachments/examples.json
+++ b/docs/modules/ROOT/attachments/examples.json
@@ -24,6 +24,11 @@
"description": "Shows how to extract, transform and load between two
databases",
"link":
"https://github.com/apache/camel-quarkus-examples/tree/main/jdbc-datasource";
},
+ {
+ "title": "FHIR",
+ "description": "Shows how to use Camel FHIR with Quarkus.",
+ "link": "https://github.com/apache/camel-quarkus-examples/tree/main/fhir";
+ },
{
"title": "File consumer with Bindy \u0026 FTP",
"description": "Shows how to consume CSV files, marshal \u0026 unmarshal
the data and send it onwards via FTP",
diff --git a/fhir/README.adoc b/fhir/README.adoc
new file mode 100644
index 0000000..4d5b8d6
--- /dev/null
+++ b/fhir/README.adoc
@@ -0,0 +1,263 @@
+= FHIR: A Camel Quarkus example
+:cq-example-description: An example that shows how to use Camel FHIR with
Quarkus.
+
+{cq-description}
+
+TIP: Check the
https://camel.apache.org/camel-quarkus/latest/first-steps.html[Camel Quarkus
User guide] for prerequisites
+and other general information.
+
+This example exposes a simple REST API to upload HL7V2 patients from a file,
convert them to FHIR R4 patients and send them to a FHIR server.
+
+=== FHIR Server container
+
+To run the application in development, from the runnable JAR or as a native
application, you must first start a FHIR server container.
+
+[source,shell]
+----
+ docker run -ti -e hapi.fhir.fhir_version=R4 \
+ -e hapi.fhir.allow_multiple_delete=true -e \
+ -e hapi.fhir.reuse_cached_search_results_millis=-1 \
+ -p 8080:8080 docker.io/hapiproject/hapi:v7.4.0
+----
+
+Note that the container startup can take up to 30 seconds to complete.
+
+=== Start in the Development mode
+
+Ensure that the aforementioned FHIR server container is started and run.
+
+[source,shell]
+----
+$ mvn clean compile quarkus:dev
+----
+
+The above command compiles the project, starts the application and lets the
Quarkus tooling watch for changes in your
+workspace. Any modifications in your project will automatically take effect in
the running application.
+
+TIP: Please refer to the Development mode section of
+https://camel.apache.org/camel-quarkus/latest/first-steps.html#_development_mode[Camel
Quarkus User guide] for more details.
+
+To interact with the application, first capture the local host / port of the
running application.
+
+[source,shell]
+----
+$ APPLICATION_HOST=localhost:8080
+----
+
+Next, upload some patient data.
+
+[source,shell]
+----
+$ curl -X POST -H 'Content-Type: application/json' --data-binary
@src/test/resources/data/hl7v2.patient "http://${APPLICATION_HOST}/api/patients";
+----
+
+A JSON response will be generated of the patient record.
+
+[source,json]
+----
+{
+ "resourceType": "Patient",
+ "id": "1",
+ "name": [
+ {
+ "family": "Price",
+ "given": [
+ "Vincent"
+ ]
+ }
+ ]
+}
+----
+
+Use the `id` value to retrieve the patient record.
+
+[source,shell]
+----
+$ curl "http://${APPLICATION_HOST}/api/patients/1";
+----
+
+=== Package and run the application
+
+Once you are done with developing you may want to package and run the
application.
+
+TIP: Find more details about the JVM mode and Native mode in the Package and
run section of
+https://camel.apache.org/camel-quarkus/latest/first-steps.html#_package_and_run_the_application[Camel
Quarkus User guide]
+
+Ensure that the aforementioned FHIR server container is started before running
the commands below.
+
+=== JVM mode
+
+[source,shell]
+----
+
+$ mvn clean package
+$ java -jar target/quarkus-app/quarkus-run.jar
+...
+[io.quarkus] (main) camel-quarkus-examples-... started in 0.885s. Listening
on: http://0.0.0.0:8080
+----
+
+=== Native mode
+
+IMPORTANT: Native mode requires having GraalVM and other tools installed.
Please check the Prerequisites section
+of
https://camel.apache.org/camel-quarkus/latest/first-steps.html#_prerequisites[Camel
Quarkus User guide].
+
+To prepare a native executable using GraalVM, run the following command:
+
+[source,shell]
+----
+$ mvn clean package -Pnative
+$ ./target/*-runner
+...
+[io.quarkus] (main) camel-quarkus-examples-... started in 0.026s. Listening
on: http://0.0.0.0:8080
+...
+----
+
+==== Deploying to Kubernetes
+
+You can build a container image for the application like this. Refer to the
https://quarkus.io/guides/deploying-to-kubernetes[Quarkus Kubernetes guide] for
options around customizing image names, registries etc.
+
+[source,shell]
+----
+$ mvn clean package -DskipTests -Dquarkus.container-image.build=true
+----
+
+If you are using a local development cluster like Kind or k3s, you can use
host the container image on your local host. Or, with minikube, use the Docker
daemon from the cluster virtual machine `eval $(minikube docker-env)`.
Otherwise, you'll need to push the image to a registry of your choosing.
+
+Next apply the necessary resources to the cluster.
+
+[source,shell]
+----
+$ kubectl apply -f target/kubernetes/kubernetes.yml
+
+service/camel-quarkus-examples-fhir created
+service/fhir-server created
+deployment.apps/camel-quarkus-examples-fhir created
+deployment.apps/fhir-server-deployment created
+----
+
+TIP: You can build & deploy in one single step by doing `mvn clean package
-DskipTests -Dquarkus.kubernetes.deploy=true`
+
+Check that pods are running. Note that depending on available cluster
resources, the fhir-server pod may take up to 5 minutes to start.
+
+[source,shell]
+----
+$ kubectl get pods
+
+NAME READY STATUS
RESTARTS AGE
+camel-quarkus-examples-fhir-5d48f4d85c-sjl8k 1/1 Running 0
21s
+fhir-server-5c667bccfc-52xfz 1/1 Running 0
21s
+----
+
+To interact with the application, set the `APPLICATION_HOST` variable to
whatever host / port combination the application is exposed on in your cluster.
+
+[source,shell]
+----
+$ APPLICATION_HOST=<application exposed host here>
+----
+
+Next, upload some patient data.
+
+[source,shell]
+----
+$ curl -X POST -H 'Content-Type: application/json' --data-binary
@src/test/resources/data/hl7v2.patient "http://${APPLICATION_HOST}/api/patients";
+----
+
+A JSON response will be generated of the patient record.
+
+[source,json]
+----
+{
+ "resourceType": "Patient",
+ "id": "1",
+ "name": [
+ {
+ "family": "Price",
+ "given": [
+ "Vincent"
+ ]
+ }
+ ]
+}
+----
+
+Use the `id` value to retrieve the patient record.
+
+[source,shell]
+----
+$ curl "http://${APPLICATION_HOST}/api/patients/1";
+----
+
+To clean up do.
+
+[source,shell]
+----
+$ kubectl delete all -l app.kubernetes.io/name=camel-quarkus-examples-fhir
+----
+
+[NOTE]
+====
+If you need to configure container resource limits & requests, or enable the
Quarkus Kubernetes client to trust self signed certificates, you can find these
configuration options in `src/main/resources/application.properties`. Simply
uncomment them and set your desired values.
+====
+
+==== Deploying to OpenShift
+
+To start a Source To Image (S2I) build and deploy the application.
+
+[source,shell]
+----
+$ mvn clean package -DskipTests -Dquarkus.kubernetes.deploy=true -Dopenshift
+----
+
+You can check the pod status and tail logs using the commands mentioned above
in the Kubernetes section. Use the `oc` binary instead of `kubectl` if
preferred.
+
+To interact with the application, first identify the OpenShift route URL.
+
+[source,shell]
+----
+$ APPLICATION_HOST=$(oc get route camel-quarkus-examples-fhir -o
jsonpath='{.spec.host}')
+----
+
+Next, upload some patient data.
+
+[source,shell]
+----
+$ curl -X POST -H 'Content-Type: application/json' --data-binary
@src/test/resources/data/hl7v2.patient "http://${APPLICATION_HOST}/api/patients";
+----
+
+A JSON response will be generated of the patient record.
+
+[source,json]
+----
+{
+ "resourceType": "Patient",
+ "id": "1",
+ "name": [
+ {
+ "family": "Price",
+ "given": [
+ "Vincent"
+ ]
+ }
+ ]
+}
+----
+
+Use the `id` value to retrieve the patient record.
+
+[source,shell]
+----
+$ curl "http://${APPLICATION_HOST}/api/patients/1";
+----
+
+The JSON response should match the value returned on the create patient
request.
+
+To clean up do.
+
+[source,shell]
+----
+$ oc delete all -l app.kubernetes.io/name=camel-quarkus-examples-fhir
+----
+
+== Feedback
+
+Please report bugs and propose improvements via
https://github.com/apache/camel-quarkus/issues[GitHub issues of Camel Quarkus]
project.
diff --git a/fhir/eclipse-formatter-config.xml
b/fhir/eclipse-formatter-config.xml
new file mode 100644
index 0000000..2248b2b
--- /dev/null
+++ b/fhir/eclipse-formatter-config.xml
@@ -0,0 +1,276 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one or more
+ contributor license agreements. See the NOTICE file distributed with
+ this work for additional information regarding copyright ownership.
+ The ASF licenses this file to You under the Apache License, Version 2.0
+ (the "License"); you may not use this file except in compliance with
+ the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing, software
+ distributed under the License is distributed on an "AS IS" BASIS,
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ See the License for the specific language governing permissions and
+ limitations under the License.
+
+-->
+<profiles version="8">
+ <profile name="Camel Java Conventions" version="8"
kind="CodeFormatterProfile">
+ <setting
id="org.eclipse.jdt.core.formatter.align_type_members_on_columns"
value="false"/>
+ <setting
id="org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression"
value="16"/>
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value="16"/>
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value="16"/>
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value="16"/>
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value="16"/>
+ <setting
id="org.eclipse.jdt.core.formatter.alignment_for_binary_expression" value="16"/>
+ <setting id="org.eclipse.jdt.core.formatter.alignment_for_compact_if"
value="16"/>
+ <setting
id="org.eclipse.jdt.core.formatter.alignment_for_conditional_expression"
value="16"/>
+ <setting
id="org.eclipse.jdt.core.formatter.alignment_for_enum_constants" value="16"/>
+ <setting
id="org.eclipse.jdt.core.formatter.alignment_for_expressions_in_array_initializer"
value="16"/>
+ <setting
id="org.eclipse.jdt.core.formatter.alignment_for_multiple_fields" value="16"/>
+ <setting
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value="16"/>
+ <setting
id="org.eclipse.jdt.core.formatter.alignment_for_parameters_in_method_declaration"
value="16"/>
+ <setting
id="org.eclipse.jdt.core.formatter.alignment_for_selector_in_method_invocation"
value="16"/>
+ <setting
id="org.eclipse.jdt.core.formatter.alignment_for_superclass_in_type_declaration"
value="16"/>
+ <setting
id="org.eclipse.jdt.core.formatter.alignment_for_superinterfaces_in_enum_declaration"
value="16"/>
+ <setting
id="org.eclipse.jdt.core.formatter.alignment_for_superinterfaces_in_type_declaration"
value="16"/>
+ <setting
id="org.eclipse.jdt.core.formatter.alignment_for_throws_clause_in_constructor_declaration"
value="16"/>
+ <setting
id="org.eclipse.jdt.core.formatter.alignment_for_throws_clause_in_method_declaration"
value="16"/>
+ <setting id="org.eclipse.jdt.core.formatter.blank_lines_after_imports"
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id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_for_increments"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_for_inits"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_method_declaration_parameters"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_method_declaration_throws"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_method_invocation_arguments"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_multiple_field_declarations"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_multiple_local_declarations"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_parameterized_type_reference"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_superinterfaces"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_type_arguments"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_type_parameters"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_ellipsis" value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_opening_angle_bracket_in_parameterized_type_reference"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_opening_angle_bracket_in_type_arguments"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_opening_angle_bracket_in_type_parameters"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_opening_brace_in_array_initializer"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_opening_bracket_in_array_allocation_expression"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_opening_bracket_in_array_reference"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_annotation"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_cast"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_catch"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_constructor_declaration"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_enum_constant"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_for"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_if"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_method_declaration"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_method_invocation"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_parenthesized_expression"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_switch"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_synchronized"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_while"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_postfix_operator"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_prefix_operator"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_question_in_conditional"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_question_in_wildcard"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_semicolon_in_for"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_after_unary_operator" value="do
not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_and_in_type_parameter"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_assignment_operator"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_at_in_annotation_type_declaration"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_binary_operator"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_closing_angle_bracket_in_parameterized_type_reference"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_closing_angle_bracket_in_type_arguments"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_closing_angle_bracket_in_type_parameters"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_closing_brace_in_array_initializer"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_closing_bracket_in_array_allocation_expression"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_closing_bracket_in_array_reference"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_annotation"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_cast"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_catch"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_constructor_declaration"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_enum_constant"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_for"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_if"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_method_declaration"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_method_invocation"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_parenthesized_expression"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_switch"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_synchronized"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_while"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_colon_in_assert"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_colon_in_case" value="do
not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_colon_in_conditional"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_colon_in_default"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_colon_in_for"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_colon_in_labeled_statement"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_allocation_expression"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_annotation"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_array_initializer"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_constructor_declaration_parameters"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_constructor_declaration_throws"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_enum_constant_arguments"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_enum_declarations"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_explicitconstructorcall_arguments"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_for_increments"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_for_inits"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_method_declaration_parameters"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_method_declaration_throws"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_method_invocation_arguments"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_multiple_field_declarations"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_multiple_local_declarations"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_parameterized_type_reference"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_superinterfaces"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_type_arguments"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_type_parameters"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_ellipsis" value="do not
insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_angle_bracket_in_parameterized_type_reference"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_angle_bracket_in_type_arguments"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_angle_bracket_in_type_parameters"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_annotation_type_declaration"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_anonymous_type_declaration"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_array_initializer"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_block"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_constructor_declaration"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_enum_constant"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_enum_declaration"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_method_declaration"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_switch"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_type_declaration"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_bracket_in_array_allocation_expression"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_bracket_in_array_reference"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_bracket_in_array_type_reference"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_annotation"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_annotation_type_member_declaration"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_catch"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_constructor_declaration"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_enum_constant"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_for"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_if"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_method_declaration"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_method_invocation"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_parenthesized_expression"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_switch"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_synchronized"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_while"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_postfix_operator"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_prefix_operator"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_question_in_conditional"
value="insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_question_in_wildcard"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_semicolon" value="do not
insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_semicolon_in_for"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_before_unary_operator"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_between_brackets_in_array_type_reference"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_between_empty_braces_in_array_initializer"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_between_empty_brackets_in_array_allocation_expression"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_annotation_type_member_declaration"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_constructor_declaration"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_enum_constant"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_method_declaration"
value="do not insert"/>
+ <setting
id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_method_invocation"
value="do not insert"/>
+ <setting id="org.eclipse.jdt.core.formatter.join_lines_in_comments"
value="false"/>
+ <setting id="org.eclipse.jdt.core.formatter.join_wrapped_lines"
value="false"/>
+ <setting
id="org.eclipse.jdt.core.formatter.keep_else_statement_on_same_line"
value="false"/>
+ <setting
id="org.eclipse.jdt.core.formatter.keep_empty_array_initializer_on_one_line"
value="false"/>
+ <setting id="org.eclipse.jdt.core.formatter.keep_imple_if_on_one_line"
value="false"/>
+ <setting
id="org.eclipse.jdt.core.formatter.keep_then_statement_on_same_line"
value="false"/>
+ <setting id="org.eclipse.jdt.core.formatter.lineSplit" value="128"/>
+ <setting
id="org.eclipse.jdt.core.formatter.number_of_blank_lines_at_beginning_of_method_body"
value="0"/>
+ <setting
id="org.eclipse.jdt.core.formatter.number_of_empty_lines_to_preserve"
value="1"/>
+ <setting
id="org.eclipse.jdt.core.formatter.put_empty_statement_on_new_line"
value="true"/>
+ <setting id="org.eclipse.jdt.core.formatter.tabulation.char"
value="space"/>
+ <setting id="org.eclipse.jdt.core.formatter.tabulation.size"
value="4"/>
+ <setting
id="org.eclipse.jdt.core.formatter.use_tabs_only_for_leading_indentations"
value="false"/>
+ <setting id="org.eclipse.jdt.core.formatter.use_on_off_tags"
value="true"/>
+ <setting id="org.eclipse.jdt.core.formatter.disabling_tag"
value="CHECKSTYLE:OFF"/>
+ <setting id="org.eclipse.jdt.core.formatter.enabling_tag"
value="CHECKSTYLE:ON"/>
+ </profile>
+</profiles>
diff --git a/fhir/pom.xml b/fhir/pom.xml
new file mode 100644
index 0000000..48f10a7
--- /dev/null
+++ b/fhir/pom.xml
@@ -0,0 +1,407 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one or more
+ contributor license agreements. See the NOTICE file distributed with
+ this work for additional information regarding copyright ownership.
+ The ASF licenses this file to You under the Apache License, Version 2.0
+ (the "License"); you may not use this file except in compliance with
+ the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing, software
+ distributed under the License is distributed on an "AS IS" BASIS,
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ See the License for the specific language governing permissions and
+ limitations under the License.
+
+-->
+<project xmlns="http://maven.apache.org/POM/4.0.0";
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
http://maven.apache.org/xsd/maven-4.0.0.xsd";>
+ <modelVersion>4.0.0</modelVersion>
+
+ <artifactId>camel-quarkus-examples-fhir</artifactId>
+ <groupId>org.apache.camel.quarkus.examples</groupId>
+ <version>3.16.0-SNAPSHOT</version>
+
+ <name>Camel Quarkus :: Examples :: FHIR</name>
+ <description>Camel Quarkus Example :: FHIR</description>
+
+ <properties>
+ <quarkus.platform.version>3.15.1</quarkus.platform.version>
+
<camel-quarkus.platform.version>${quarkus.platform.version}</camel-quarkus.platform.version>
+
+
<quarkus.platform.group-id>io.quarkus.platform</quarkus.platform.group-id>
+
<quarkus.platform.artifact-id>quarkus-bom</quarkus.platform.artifact-id>
+
<camel-quarkus.platform.group-id>${quarkus.platform.group-id}</camel-quarkus.platform.group-id>
+
<camel-quarkus.platform.artifact-id>quarkus-camel-bom</camel-quarkus.platform.artifact-id>
+
+ <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
+
<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
+ <maven.compiler.target>17</maven.compiler.target>
+ <maven.compiler.source>17</maven.compiler.source>
+
<maven.compiler.testTarget>${maven.compiler.target}</maven.compiler.testTarget>
+
<maven.compiler.testSource>${maven.compiler.source}</maven.compiler.testSource>
+
+ <formatter-maven-plugin.version>2.24.1</formatter-maven-plugin.version>
+ <groovy-maven-plugin.version>2.1.1</groovy-maven-plugin.version>
+ <impsort-maven-plugin.version>1.12.0</impsort-maven-plugin.version>
+ <license-maven-plugin.version>4.5</license-maven-plugin.version>
+ <maven-compiler-plugin.version>3.13.0</maven-compiler-plugin.version>
+ <maven-jar-plugin.version>3.4.2</maven-jar-plugin.version>
+ <maven-resources-plugin.version>3.3.1</maven-resources-plugin.version>
+ <maven-surefire-plugin.version>3.5.1</maven-surefire-plugin.version>
+
+ <hapi-structures-v24.version>2.5.1</hapi-structures-v24.version>
+ <commons-collections4.version>4.4</commons-collections4.version>
+ </properties>
+
+ <dependencyManagement>
+ <dependencies>
+ <!-- Import BOM -->
+ <dependency>
+ <groupId>${quarkus.platform.group-id}</groupId>
+ <artifactId>${quarkus.platform.artifact-id}</artifactId>
+ <version>${quarkus.platform.version}</version>
+ <type>pom</type>
+ <scope>import</scope>
+ </dependency>
+ <dependency>
+ <groupId>${camel-quarkus.platform.group-id}</groupId>
+ <artifactId>${camel-quarkus.platform.artifact-id}</artifactId>
+ <version>${camel-quarkus.platform.version}</version>
+ <type>pom</type>
+ <scope>import</scope>
+ </dependency>
+ </dependencies>
+ </dependencyManagement>
+
+ <dependencies>
+ <dependency>
+ <groupId>io.quarkus</groupId>
+ <artifactId>quarkus-arc</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.camel.quarkus</groupId>
+ <artifactId>camel-quarkus-direct</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.camel.quarkus</groupId>
+ <artifactId>camel-quarkus-fhir</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.camel.quarkus</groupId>
+ <artifactId>camel-quarkus-file</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.camel.quarkus</groupId>
+ <artifactId>camel-quarkus-hl7</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.camel.quarkus</groupId>
+ <artifactId>camel-quarkus-rest</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>ca.uhn.hapi</groupId>
+ <artifactId>hapi-structures-v24</artifactId>
+ <version>${hapi-structures-v24.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.commons</groupId>
+ <artifactId>commons-collections4</artifactId>
+ <version>${commons-collections4.version}</version>
+ </dependency>
+
+ <!-- Test -->
+ <dependency>
+ <groupId>io.quarkus</groupId>
+ <artifactId>quarkus-junit5</artifactId>
+ <scope>test</scope>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.camel.quarkus</groupId>
+ <artifactId>camel-quarkus-mock</artifactId>
+ <scope>test</scope>
+ </dependency>
+ <dependency>
+ <groupId>io.rest-assured</groupId>
+ <artifactId>rest-assured</artifactId>
+ <scope>test</scope>
+ </dependency>
+ <dependency>
+ <groupId>org.testcontainers</groupId>
+ <artifactId>testcontainers</artifactId>
+ <scope>test</scope>
+ </dependency>
+ </dependencies>
+
+ <build>
+ <pluginManagement>
+ <plugins>
+ <plugin>
+ <groupId>org.codehaus.gmaven</groupId>
+ <artifactId>groovy-maven-plugin</artifactId>
+ <version>${groovy-maven-plugin.version}</version>
+ </plugin>
+
+ <plugin>
+ <groupId>net.revelc.code.formatter</groupId>
+ <artifactId>formatter-maven-plugin</artifactId>
+ <version>${formatter-maven-plugin.version}</version>
+ <configuration>
+
<configFile>${maven.multiModuleProjectDirectory}/eclipse-formatter-config.xml</configFile>
+ <lineEnding>LF</lineEnding>
+ </configuration>
+ </plugin>
+
+ <plugin>
+ <groupId>net.revelc.code</groupId>
+ <artifactId>impsort-maven-plugin</artifactId>
+ <version>${impsort-maven-plugin.version}</version>
+ <configuration>
+ <groups>java.,javax.,org.w3c.,org.xml.,junit.</groups>
+ <removeUnused>true</removeUnused>
+ <staticAfter>true</staticAfter>
+
<staticGroups>java.,javax.,org.w3c.,org.xml.,junit.</staticGroups>
+ </configuration>
+ </plugin>
+
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-compiler-plugin</artifactId>
+ <version>${maven-compiler-plugin.version}</version>
+ <configuration>
+ <showDeprecation>true</showDeprecation>
+ <showWarnings>true</showWarnings>
+ <compilerArgs>
+ <arg>-Xlint:unchecked</arg>
+ </compilerArgs>
+ </configuration>
+ </plugin>
+
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-surefire-plugin</artifactId>
+ <version>${maven-surefire-plugin.version}</version>
+ <configuration>
+ <failIfNoTests>false</failIfNoTests>
+ <systemPropertyVariables>
+
<java.util.logging.manager>org.jboss.logmanager.LogManager</java.util.logging.manager>
+ </systemPropertyVariables>
+ </configuration>
+ </plugin>
+
+ <plugin>
+ <groupId>${quarkus.platform.group-id}</groupId>
+ <artifactId>quarkus-maven-plugin</artifactId>
+ <version>${quarkus.platform.version}</version>
+ </plugin>
+
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-failsafe-plugin</artifactId>
+ <version>${maven-surefire-plugin.version}</version>
+ </plugin>
+
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-jar-plugin</artifactId>
+ <version>${maven-jar-plugin.version}</version>
+ </plugin>
+
+ <plugin>
+ <groupId>com.mycila</groupId>
+ <artifactId>license-maven-plugin</artifactId>
+ <version>${license-maven-plugin.version}</version>
+ <configuration>
+ <failIfUnknown>true</failIfUnknown>
+
<header>${maven.multiModuleProjectDirectory}/header.txt</header>
+ <excludes>
+ <exclude>**/*.adoc</exclude>
+ <exclude>**/*.txt</exclude>
+ <exclude>**/LICENSE.txt</exclude>
+ <exclude>**/LICENSE</exclude>
+ <exclude>**/NOTICE.txt</exclude>
+ <exclude>**/NOTICE</exclude>
+ <exclude>**/README</exclude>
+ <exclude>**/pom.xml.versionsBackup</exclude>
+ <exclude>**/*.patient</exclude>
+ </excludes>
+ <mapping>
+
<Dockerfile.jvm>CAMEL_PROPERTIES_STYLE</Dockerfile.jvm>
+
<Dockerfile.legacy-jar>CAMEL_PROPERTIES_STYLE</Dockerfile.legacy-jar>
+
<Dockerfile.native>CAMEL_PROPERTIES_STYLE</Dockerfile.native>
+
<Dockerfile.native-micro>CAMEL_PROPERTIES_STYLE</Dockerfile.native-micro>
+ <java>SLASHSTAR_STYLE</java>
+ <properties>CAMEL_PROPERTIES_STYLE</properties>
+ <kt>SLASHSTAR_STYLE</kt>
+ </mapping>
+ <headerDefinitions>
+
<headerDefinition>${maven.multiModuleProjectDirectory}/license-properties-headerdefinition.xml</headerDefinition>
+ </headerDefinitions>
+ </configuration>
+ </plugin>
+ </plugins>
+ </pluginManagement>
+
+ <plugins>
+ <plugin>
+ <groupId>${quarkus.platform.group-id}</groupId>
+ <artifactId>quarkus-maven-plugin</artifactId>
+ <executions>
+ <execution>
+ <id>build</id>
+ <goals>
+ <goal>build</goal>
+ </goals>
+ </execution>
+ </executions>
+ </plugin>
+
+ <plugin>
+ <groupId>net.revelc.code.formatter</groupId>
+ <artifactId>formatter-maven-plugin</artifactId>
+ <executions>
+ <execution>
+ <id>format</id>
+ <goals>
+ <goal>format</goal>
+ </goals>
+ <phase>process-sources</phase>
+ </execution>
+ </executions>
+ </plugin>
+
+ <plugin>
+ <groupId>net.revelc.code</groupId>
+ <artifactId>impsort-maven-plugin</artifactId>
+ <executions>
+ <execution>
+ <id>sort-imports</id>
+ <goals>
+ <goal>sort</goal>
+ </goals>
+ <phase>process-sources</phase>
+ </execution>
+ </executions>
+ </plugin>
+
+ <plugin>
+ <groupId>org.codehaus.gmaven</groupId>
+ <artifactId>groovy-maven-plugin</artifactId>
+ <executions>
+ <execution>
+ <id>sync-k8s-resource-versions</id>
+ <inherited>false</inherited>
+ <goals>
+ <goal>execute</goal>
+ </goals>
+ <phase>process-sources</phase>
+ <configuration>
+ <source>
+ import java.util.regex.Matcher
+ import java.util.regex.Pattern
+
+ Pattern pattern =
Pattern.compile("app.kubernetes.io/version: .*")
+
+ ["kubernetes", "openshift"].each { k8sResource
->
+ String sanitizedBasedir =
project.basedir.path.replace('\\', '/')
+ File file = new
File("${sanitizedBasedir}/src/main/kubernetes/${k8sResource}.yml")
+ String content = file.text
+ Matcher matcher = pattern.matcher(content)
+
+ if (matcher.find()) {
+ String updatedContent =
matcher.replaceAll("app.kubernetes.io/version: ${project.version}")
+ if (updatedContent != content) {
+ log.info("Updating
app.kubernetes.io/version label to ${project.version} in ${file.path}")
+ file.write(updatedContent)
+ }
+ }
+ }
+ </source>
+ </configuration>
+ </execution>
+ </executions>
+ </plugin>
+ </plugins>
+ </build>
+
+ <profiles>
+ <profile>
+ <id>native</id>
+ <activation>
+ <property>
+ <name>native</name>
+ </property>
+ </activation>
+ <properties>
+ <quarkus.native.enabled>true</quarkus.native.enabled>
+ </properties>
+ <build>
+ <plugins>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-failsafe-plugin</artifactId>
+ <executions>
+ <execution>
+ <goals>
+ <goal>integration-test</goal>
+ <goal>verify</goal>
+ </goals>
+ <configuration>
+ <systemPropertyVariables>
+
<quarkus.native.enabled>${quarkus.native.enabled}</quarkus.native.enabled>
+ </systemPropertyVariables>
+ </configuration>
+ </execution>
+ </executions>
+ </plugin>
+ </plugins>
+ </build>
+ </profile>
+ <profile>
+ <id>kubernetes</id>
+ <activation>
+ <activeByDefault>true</activeByDefault>
+ <property>
+ <name>kubernetes</name>
+ </property>
+ </activation>
+ <dependencies>
+ <dependency>
+ <groupId>io.quarkus</groupId>
+ <artifactId>quarkus-kubernetes</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>io.quarkus</groupId>
+ <artifactId>quarkus-container-image-jib</artifactId>
+ </dependency>
+ </dependencies>
+ </profile>
+ <profile>
+ <id>openshift</id>
+ <activation>
+ <property>
+ <name>openshift</name>
+ </property>
+ </activation>
+ <dependencies>
+ <dependency>
+ <groupId>io.quarkus</groupId>
+ <artifactId>quarkus-openshift</artifactId>
+ </dependency>
+ </dependencies>
+ </profile>
+ <profile>
+ <id>skip-testcontainers-tests</id>
+ <activation>
+ <property>
+ <name>skip-testcontainers-tests</name>
+ </property>
+ </activation>
+ <properties>
+ <skipTests>true</skipTests>
+ </properties>
+ </profile>
+ </profiles>
+</project>
diff --git a/fhir/src/main/docker/Dockerfile.jvm
b/fhir/src/main/docker/Dockerfile.jvm
new file mode 100644
index 0000000..880b068
--- /dev/null
+++ b/fhir/src/main/docker/Dockerfile.jvm
@@ -0,0 +1,113 @@
+## ---------------------------------------------------------------------------
+## Licensed to the Apache Software Foundation (ASF) under one or more
+## contributor license agreements. See the NOTICE file distributed with
+## this work for additional information regarding copyright ownership.
+## The ASF licenses this file to You under the Apache License, Version 2.0
+## (the "License"); you may not use this file except in compliance with
+## the License. You may obtain a copy of the License at
+##
+## http://www.apache.org/licenses/LICENSE-2.0
+##
+## Unless required by applicable law or agreed to in writing, software
+## distributed under the License is distributed on an "AS IS" BASIS,
+## WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+## See the License for the specific language governing permissions and
+## limitations under the License.
+## ---------------------------------------------------------------------------
+####
+# This Dockerfile is used in order to build a container that runs the Quarkus
application in JVM mode
+#
+# Before building the container image run:
+#
+# ./mvnw package
+#
+# Then, build the image with:
+#
+# docker build -f src/main/docker/Dockerfile.jvm -t
quarkus/code-with-quarkus-jvm .
+#
+# Then run the container using:
+#
+# docker run -i --rm -p 8080:8080 quarkus/code-with-quarkus-jvm
+#
+# If you want to include the debug port into your docker image
+# you will have to expose the debug port (default 5005 being the default) like
this : EXPOSE 8080 5005.
+# Additionally you will have to set -e JAVA_DEBUG=true and -e
JAVA_DEBUG_PORT=*:5005
+# when running the container
+#
+# Then run the container using :
+#
+# docker run -i --rm -p 8080:8080 quarkus/code-with-quarkus-jvm
+#
+# This image uses the `run-java.sh` script to run the application.
+# This scripts computes the command line to execute your Java application, and
+# includes memory/GC tuning.
+# You can configure the behavior using the following environment properties:
+# - JAVA_OPTS: JVM options passed to the `java` command (example:
"-verbose:class")
+# - JAVA_OPTS_APPEND: User specified Java options to be appended to generated
options
+# in JAVA_OPTS (example: "-Dsome.property=foo")
+# - JAVA_MAX_MEM_RATIO: Is used when no `-Xmx` option is given in JAVA_OPTS.
This is
+# used to calculate a default maximal heap memory based on a containers
restriction.
+# If used in a container without any memory constraints for the container
then this
+# option has no effect. If there is a memory constraint then `-Xmx` is set
to a ratio
+# of the container available memory as set here. The default is `50` which
means 50%
+# of the available memory is used as an upper boundary. You can skip this
mechanism by
+# setting this value to `0` in which case no `-Xmx` option is added.
+# - JAVA_INITIAL_MEM_RATIO: Is used when no `-Xms` option is given in
JAVA_OPTS. This
+# is used to calculate a default initial heap memory based on the maximum
heap memory.
+# If used in a container without any memory constraints for the container
then this
+# option has no effect. If there is a memory constraint then `-Xms` is set
to a ratio
+# of the `-Xmx` memory as set here. The default is `25` which means 25% of
the `-Xmx`
+# is used as the initial heap size. You can skip this mechanism by setting
this value
+# to `0` in which case no `-Xms` option is added (example: "25")
+# - JAVA_MAX_INITIAL_MEM: Is used when no `-Xms` option is given in JAVA_OPTS.
+# This is used to calculate the maximum value of the initial heap memory. If
used in
+# a container without any memory constraints for the container then this
option has
+# no effect. If there is a memory constraint then `-Xms` is limited to the
value set
+# here. The default is 4096MB which means the calculated value of `-Xms`
never will
+# be greater than 4096MB. The value of this variable is expressed in MB
(example: "4096")
+# - JAVA_DIAGNOSTICS: Set this to get some diagnostics information to standard
output
+# when things are happening. This option, if set to true, will set
+# `-XX:+UnlockDiagnosticVMOptions`. Disabled by default (example: "true").
+# - JAVA_DEBUG: If set remote debugging will be switched on. Disabled by
default (example:
+# true").
+# - JAVA_DEBUG_PORT: Port used for remote debugging. Defaults to 5005
(example: "8787").
+# - CONTAINER_CORE_LIMIT: A calculated core limit as described in
+# https://www.kernel.org/doc/Documentation/scheduler/sched-bwc.txt.
(example: "2")
+# - CONTAINER_MAX_MEMORY: Memory limit given to the container (example:
"1024").
+# - GC_MIN_HEAP_FREE_RATIO: Minimum percentage of heap free after GC to avoid
expansion.
+# (example: "20")
+# - GC_MAX_HEAP_FREE_RATIO: Maximum percentage of heap free after GC to avoid
shrinking.
+# (example: "40")
+# - GC_TIME_RATIO: Specifies the ratio of the time spent outside the garbage
collection.
+# (example: "4")
+# - GC_ADAPTIVE_SIZE_POLICY_WEIGHT: The weighting given to the current GC time
versus
+# previous GC times. (example: "90")
+# - GC_METASPACE_SIZE: The initial metaspace size. (example: "20")
+# - GC_MAX_METASPACE_SIZE: The maximum metaspace size. (example: "100")
+# - GC_CONTAINER_OPTIONS: Specify Java GC to use. The value of this variable
should
+# contain the necessary JRE command-line options to specify the required GC,
which
+# will override the default of `-XX:+UseParallelGC` (example: -XX:+UseG1GC).
+# - HTTPS_PROXY: The location of the https proxy. (example:
"myuser@127.0.0.1:8080")
+# - HTTP_PROXY: The location of the http proxy. (example:
"myuser@127.0.0.1:8080")
+# - NO_PROXY: A comma separated lists of hosts, IP addresses or domains that
can be
+# accessed directly. (example: "foo.example.com,bar.example.com")
+#
+###
+FROM registry.access.redhat.com/ubi8/openjdk-21:1.20
+
+ENV LANGUAGE='en_US:en'
+
+
+# We make four distinct layers so if there are application changes the library
layers can be re-used
+COPY --chown=185 target/quarkus-app/lib/ /deployments/lib/
+COPY --chown=185 target/quarkus-app/*.jar /deployments/
+COPY --chown=185 target/quarkus-app/app/ /deployments/app/
+COPY --chown=185 target/quarkus-app/quarkus/ /deployments/quarkus/
+
+EXPOSE 8080
+USER 185
+ENV JAVA_OPTS_APPEND="-Dquarkus.http.host=0.0.0.0
-Djava.util.logging.manager=org.jboss.logmanager.LogManager"
+ENV JAVA_APP_JAR="/deployments/quarkus-run.jar"
+
+ENTRYPOINT [ "/opt/jboss/container/java/run/run-java.sh" ]
+
diff --git a/fhir/src/main/docker/Dockerfile.legacy-jar
b/fhir/src/main/docker/Dockerfile.legacy-jar
new file mode 100644
index 0000000..8fc0368
--- /dev/null
+++ b/fhir/src/main/docker/Dockerfile.legacy-jar
@@ -0,0 +1,109 @@
+## ---------------------------------------------------------------------------
+## Licensed to the Apache Software Foundation (ASF) under one or more
+## contributor license agreements. See the NOTICE file distributed with
+## this work for additional information regarding copyright ownership.
+## The ASF licenses this file to You under the Apache License, Version 2.0
+## (the "License"); you may not use this file except in compliance with
+## the License. You may obtain a copy of the License at
+##
+## http://www.apache.org/licenses/LICENSE-2.0
+##
+## Unless required by applicable law or agreed to in writing, software
+## distributed under the License is distributed on an "AS IS" BASIS,
+## WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+## See the License for the specific language governing permissions and
+## limitations under the License.
+## ---------------------------------------------------------------------------
+####
+# This Dockerfile is used in order to build a container that runs the Quarkus
application in JVM mode
+#
+# Before building the container image run:
+#
+# ./mvnw package -Dquarkus.package.jar.type=legacy-jar
+#
+# Then, build the image with:
+#
+# docker build -f src/main/docker/Dockerfile.legacy-jar -t
quarkus/code-with-quarkus-legacy-jar .
+#
+# Then run the container using:
+#
+# docker run -i --rm -p 8080:8080 quarkus/code-with-quarkus-legacy-jar
+#
+# If you want to include the debug port into your docker image
+# you will have to expose the debug port (default 5005 being the default) like
this : EXPOSE 8080 5005.
+# Additionally you will have to set -e JAVA_DEBUG=true and -e
JAVA_DEBUG_PORT=*:5005
+# when running the container
+#
+# Then run the container using :
+#
+# docker run -i --rm -p 8080:8080 quarkus/code-with-quarkus-legacy-jar
+#
+# This image uses the `run-java.sh` script to run the application.
+# This scripts computes the command line to execute your Java application, and
+# includes memory/GC tuning.
+# You can configure the behavior using the following environment properties:
+# - JAVA_OPTS: JVM options passed to the `java` command (example:
"-verbose:class")
+# - JAVA_OPTS_APPEND: User specified Java options to be appended to generated
options
+# in JAVA_OPTS (example: "-Dsome.property=foo")
+# - JAVA_MAX_MEM_RATIO: Is used when no `-Xmx` option is given in JAVA_OPTS.
This is
+# used to calculate a default maximal heap memory based on a containers
restriction.
+# If used in a container without any memory constraints for the container
then this
+# option has no effect. If there is a memory constraint then `-Xmx` is set
to a ratio
+# of the container available memory as set here. The default is `50` which
means 50%
+# of the available memory is used as an upper boundary. You can skip this
mechanism by
+# setting this value to `0` in which case no `-Xmx` option is added.
+# - JAVA_INITIAL_MEM_RATIO: Is used when no `-Xms` option is given in
JAVA_OPTS. This
+# is used to calculate a default initial heap memory based on the maximum
heap memory.
+# If used in a container without any memory constraints for the container
then this
+# option has no effect. If there is a memory constraint then `-Xms` is set
to a ratio
+# of the `-Xmx` memory as set here. The default is `25` which means 25% of
the `-Xmx`
+# is used as the initial heap size. You can skip this mechanism by setting
this value
+# to `0` in which case no `-Xms` option is added (example: "25")
+# - JAVA_MAX_INITIAL_MEM: Is used when no `-Xms` option is given in JAVA_OPTS.
+# This is used to calculate the maximum value of the initial heap memory. If
used in
+# a container without any memory constraints for the container then this
option has
+# no effect. If there is a memory constraint then `-Xms` is limited to the
value set
+# here. The default is 4096MB which means the calculated value of `-Xms`
never will
+# be greater than 4096MB. The value of this variable is expressed in MB
(example: "4096")
+# - JAVA_DIAGNOSTICS: Set this to get some diagnostics information to standard
output
+# when things are happening. This option, if set to true, will set
+# `-XX:+UnlockDiagnosticVMOptions`. Disabled by default (example: "true").
+# - JAVA_DEBUG: If set remote debugging will be switched on. Disabled by
default (example:
+# true").
+# - JAVA_DEBUG_PORT: Port used for remote debugging. Defaults to 5005
(example: "8787").
+# - CONTAINER_CORE_LIMIT: A calculated core limit as described in
+# https://www.kernel.org/doc/Documentation/scheduler/sched-bwc.txt.
(example: "2")
+# - CONTAINER_MAX_MEMORY: Memory limit given to the container (example:
"1024").
+# - GC_MIN_HEAP_FREE_RATIO: Minimum percentage of heap free after GC to avoid
expansion.
+# (example: "20")
+# - GC_MAX_HEAP_FREE_RATIO: Maximum percentage of heap free after GC to avoid
shrinking.
+# (example: "40")
+# - GC_TIME_RATIO: Specifies the ratio of the time spent outside the garbage
collection.
+# (example: "4")
+# - GC_ADAPTIVE_SIZE_POLICY_WEIGHT: The weighting given to the current GC time
versus
+# previous GC times. (example: "90")
+# - GC_METASPACE_SIZE: The initial metaspace size. (example: "20")
+# - GC_MAX_METASPACE_SIZE: The maximum metaspace size. (example: "100")
+# - GC_CONTAINER_OPTIONS: Specify Java GC to use. The value of this variable
should
+# contain the necessary JRE command-line options to specify the required GC,
which
+# will override the default of `-XX:+UseParallelGC` (example: -XX:+UseG1GC).
+# - HTTPS_PROXY: The location of the https proxy. (example:
"myuser@127.0.0.1:8080")
+# - HTTP_PROXY: The location of the http proxy. (example:
"myuser@127.0.0.1:8080")
+# - NO_PROXY: A comma separated lists of hosts, IP addresses or domains that
can be
+# accessed directly. (example: "foo.example.com,bar.example.com")
+#
+###
+FROM registry.access.redhat.com/ubi8/openjdk-21:1.20
+
+ENV LANGUAGE='en_US:en'
+
+
+COPY target/lib/* /deployments/lib/
+COPY target/*-runner.jar /deployments/quarkus-run.jar
+
+EXPOSE 8080
+USER 185
+ENV JAVA_OPTS_APPEND="-Dquarkus.http.host=0.0.0.0
-Djava.util.logging.manager=org.jboss.logmanager.LogManager"
+ENV JAVA_APP_JAR="/deployments/quarkus-run.jar"
+
+ENTRYPOINT [ "/opt/jboss/container/java/run/run-java.sh" ]
diff --git a/fhir/src/main/docker/Dockerfile.native
b/fhir/src/main/docker/Dockerfile.native
new file mode 100644
index 0000000..23de6b5
--- /dev/null
+++ b/fhir/src/main/docker/Dockerfile.native
@@ -0,0 +1,43 @@
+## ---------------------------------------------------------------------------
+## Licensed to the Apache Software Foundation (ASF) under one or more
+## contributor license agreements. See the NOTICE file distributed with
+## this work for additional information regarding copyright ownership.
+## The ASF licenses this file to You under the Apache License, Version 2.0
+## (the "License"); you may not use this file except in compliance with
+## the License. You may obtain a copy of the License at
+##
+## http://www.apache.org/licenses/LICENSE-2.0
+##
+## Unless required by applicable law or agreed to in writing, software
+## distributed under the License is distributed on an "AS IS" BASIS,
+## WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+## See the License for the specific language governing permissions and
+## limitations under the License.
+## ---------------------------------------------------------------------------
+####
+# This Dockerfile is used in order to build a container that runs the Quarkus
application in native (no JVM) mode.
+#
+# Before building the container image run:
+#
+# ./mvnw package -Dnative
+#
+# Then, build the image with:
+#
+# docker build -f src/main/docker/Dockerfile.native -t
quarkus/code-with-quarkus .
+#
+# Then run the container using:
+#
+# docker run -i --rm -p 8080:8080 quarkus/code-with-quarkus
+#
+###
+FROM registry.access.redhat.com/ubi8/ubi-minimal:8.10
+WORKDIR /work/
+RUN chown 1001 /work \
+ && chmod "g+rwX" /work \
+ && chown 1001:root /work
+COPY --chown=1001:root target/*-runner /work/application
+
+EXPOSE 8080
+USER 1001
+
+ENTRYPOINT ["./application", "-Dquarkus.http.host=0.0.0.0"]
diff --git a/fhir/src/main/docker/Dockerfile.native-micro
b/fhir/src/main/docker/Dockerfile.native-micro
new file mode 100644
index 0000000..a1ae3c4
--- /dev/null
+++ b/fhir/src/main/docker/Dockerfile.native-micro
@@ -0,0 +1,46 @@
+## ---------------------------------------------------------------------------
+## Licensed to the Apache Software Foundation (ASF) under one or more
+## contributor license agreements. See the NOTICE file distributed with
+## this work for additional information regarding copyright ownership.
+## The ASF licenses this file to You under the Apache License, Version 2.0
+## (the "License"); you may not use this file except in compliance with
+## the License. You may obtain a copy of the License at
+##
+## http://www.apache.org/licenses/LICENSE-2.0
+##
+## Unless required by applicable law or agreed to in writing, software
+## distributed under the License is distributed on an "AS IS" BASIS,
+## WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+## See the License for the specific language governing permissions and
+## limitations under the License.
+## ---------------------------------------------------------------------------
+####
+# This Dockerfile is used in order to build a container that runs the Quarkus
application in native (no JVM) mode.
+# It uses a micro base image, tuned for Quarkus native executables.
+# It reduces the size of the resulting container image.
+# Check https://quarkus.io/guides/quarkus-runtime-base-image for further
information about this image.
+#
+# Before building the container image run:
+#
+# ./mvnw package -Dnative
+#
+# Then, build the image with:
+#
+# docker build -f src/main/docker/Dockerfile.native-micro -t
quarkus/code-with-quarkus .
+#
+# Then run the container using:
+#
+# docker run -i --rm -p 8080:8080 quarkus/code-with-quarkus
+#
+###
+FROM quay.io/quarkus/quarkus-micro-image:2.0
+WORKDIR /work/
+RUN chown 1001 /work \
+ && chmod "g+rwX" /work \
+ && chown 1001:root /work
+COPY --chown=1001:root target/*-runner /work/application
+
+EXPOSE 8080
+USER 1001
+
+ENTRYPOINT ["./application", "-Dquarkus.http.host=0.0.0.0"]
diff --git a/fhir/src/main/java/org/acme/fhir/Routes.java
b/fhir/src/main/java/org/acme/fhir/Routes.java
new file mode 100644
index 0000000..72e60f4
--- /dev/null
+++ b/fhir/src/main/java/org/acme/fhir/Routes.java
@@ -0,0 +1,128 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements. See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.acme.fhir;
+
+import ca.uhn.fhir.context.FhirContext;
+import ca.uhn.fhir.parser.IParser;
+import ca.uhn.fhir.rest.api.MethodOutcome;
+import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
+import ca.uhn.hl7v2.HL7Exception;
+import ca.uhn.hl7v2.model.v24.message.ORU_R01;
+import ca.uhn.hl7v2.model.v24.segment.PID;
+import io.quarkus.runtime.annotations.RegisterForReflection;
+import jakarta.enterprise.context.ApplicationScoped;
+import jakarta.inject.Inject;
+import org.apache.camel.Exchange;
+import org.apache.camel.LoggingLevel;
+import org.apache.camel.Message;
+import org.apache.camel.builder.RouteBuilder;
+import org.apache.http.ProtocolException;
+import org.hl7.fhir.r4.model.CapabilityStatement;
+import org.hl7.fhir.r4.model.HumanName;
+import org.hl7.fhir.r4.model.IdType;
+import org.hl7.fhir.r4.model.Patient;
+import org.hl7.fhir.r4.model.Resource;
+
+@RegisterForReflection(targets = { Patient.class, CapabilityStatement.class,
MethodOutcome.class, Resource.class,
+ HumanName.class })
+@ApplicationScoped
+public class Routes extends RouteBuilder {
+ @Inject
+ FhirContext fhirContext;
+
+ @Override
+ public void configure() {
+ onException(ProtocolException.class)
+ .handled(true)
+ .log(LoggingLevel.ERROR,
+ "Error connecting to FHIR server with
URL:{{camel.component.fhir.server-url}}, please check the
application.properties file ${exception.message}")
+ .end();
+
+ onException(HL7Exception.class)
+ .handled(true)
+ .log(LoggingLevel.ERROR, "Error unmarshalling HL7 data
${exception.message}")
+ .end();
+
+ onException(ResourceNotFoundException.class)
+ .handled(true)
+ .choice().when(simple("${header.id} != null"))
+ .setBody(simple("Patient with id ${header.id} not found"))
+ .otherwise()
+ .setBody(simple("FHIR Server
${{camel.component.fhir.server-url}} not found"))
+ .end()
+ .setHeader(Exchange.HTTP_RESPONSE_CODE).constant(404);
+
+ // Simple REST API to create / read patient data
+ rest("/api/patients")
+ .post()
+ .to("direct:patientUpload")
+
+ .get("/{id}")
+ .to("direct:getPatient");
+
+ // Processes uploaded patient details
+ from("direct:patientUpload")
+ // unmarshall file to hl7 message
+ .unmarshal().hl7()
+ .process(exchange -> {
+ ORU_R01 msg = exchange.getIn().getBody(ORU_R01.class);
+ final PID pid =
msg.getPATIENT_RESULT().getPATIENT().getPID();
+ String surname =
pid.getPatientName()[0].getFamilyName().getFn1_Surname().getValue();
+ String name =
pid.getPatientName()[0].getGivenName().getValue();
+ String patientId =
msg.getPATIENT_RESULT().getPATIENT().getPID().getPatientID().getCx1_ID().getValue();
+ Patient patient = new Patient();
+ patient.addName().addGiven(name);
+ patient.getNameFirstRep().setFamily(surname);
+ patient.setId(patientId);
+ exchange.getIn().setBody(patient);
+ })
+ // marshall to JSON for logging
+ .marshal().fhirJson("{{camel.component.fhir.fhir-version}}")
+ .convertBodyTo(String.class)
+ .log("Inserting Patient: ${body}")
+ // create Patient in our FHIR server
+ .to("fhir://create/resource?inBody=resourceAsString")
+ // log the outcome
+ .log("Patient created successfully: ${body}")
+ // Return a JSON response to the client
+ .process(exchange -> {
+ Message message = exchange.getMessage();
+ MethodOutcome methodOutcome =
message.getBody(MethodOutcome.class);
+ IParser parser = fhirContext.newJsonParser();
+ String response =
parser.encodeResourceToString(methodOutcome.getResource());
+ message.setBody(response);
+ message.setHeader(Exchange.CONTENT_TYPE,
"application/json");
+ });
+
+ // Retrieves a patient
+ from("direct:getPatient")
+ .process(exchange -> {
+ String patientId = exchange.getMessage().getHeader("id",
String.class);
+ IdType iIdType = new IdType(patientId);
+ exchange.getMessage().setHeader("CamelFhir.id", iIdType);
+ })
+ .to("fhir://read/resourceById?resourceClass=Patient")
+ .process(exchange -> {
+ Message message = exchange.getMessage();
+ Patient patient = message.getBody(Patient.class);
+ IParser parser = fhirContext.newJsonParser();
+ String response = parser.encodeResourceToString(patient);
+ message.setBody(response);
+ message.setHeader(Exchange.CONTENT_TYPE,
"application/json");
+ });
+ }
+}
diff --git a/fhir/src/main/kubernetes/kubernetes.yml
b/fhir/src/main/kubernetes/kubernetes.yml
new file mode 100644
index 0000000..2dfa5c0
--- /dev/null
+++ b/fhir/src/main/kubernetes/kubernetes.yml
@@ -0,0 +1,112 @@
+#
+# Licensed to the Apache Software Foundation (ASF) under one or more
+# contributor license agreements. See the NOTICE file distributed with
+# this work for additional information regarding copyright ownership.
+# The ASF licenses this file to You under the Apache License, Version 2.0
+# (the "License"); you may not use this file except in compliance with
+# the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+ name: fhir-server-deployment
+ labels:
+ app.kubernetes.io/name: camel-quarkus-examples-fhir
+ app.kubernetes.io/version: 3.16.0-SNAPSHOT
+spec:
+ replicas: 1
+ selector:
+ matchLabels:
+ app.kubernetes.io/name: camel-quarkus-examples-fhir
+ app.kubernetes.io/version: 3.16.0-SNAPSHOT
+ template:
+ metadata:
+ labels:
+ app.kubernetes.io/name: camel-quarkus-examples-fhir
+ app.kubernetes.io/version: 3.16.0-SNAPSHOT
+ spec:
+ # Work around container permissions issues for /app/target
+ # https://github.com/hapifhir/hapi-fhir-jpaserver-starter/issues/519
+ initContainers:
+ - name: init-container
+ image: busybox
+ command: ['sh', '-c', 'mkdir -p /app/target']
+ volumeMounts:
+ - name: shared-data
+ mountPath: /app/target
+ containers:
+ - name: fhir-server
+ image: docker.io/hapiproject/hapi:v7.4.0
+ ports:
+ - containerPort: 8080
+ name: http
+ env:
+ - name: hapi.fhir.fhir_version
+ value: "R4"
+ - name: hapi.fhir.allow_multiple_delete
+ value: "true"
+ - name: hapi.fhir.reuse_cached_search_results_millis
+ value: "-1"
+ volumeMounts:
+ - name: shared-data
+ mountPath: /app/target
+ - mountPath: /tmp
+ name: tmp
+ livenessProbe:
+ initialDelaySeconds: 30
+ failureThreshold: 5
+ successThreshold: 1
+ periodSeconds: 15
+ timeoutSeconds: 10
+ httpGet:
+ path: /actuator/health
+ port: http
+ readinessProbe:
+ initialDelaySeconds: 30
+ failureThreshold: 5
+ successThreshold: 1
+ periodSeconds: 15
+ timeoutSeconds: 10
+ httpGet:
+ path: /actuator/health
+ port: http
+ startupProbe:
+ initialDelaySeconds: 30
+ failureThreshold: 60
+ successThreshold: 1
+ periodSeconds: 10
+ timeoutSeconds: 10
+ httpGet:
+ path: /actuator/health
+ port: http
+ volumes:
+ - name: shared-data
+ emptyDir: {}
+ - name: tmp
+ emptyDir: {}
+---
+apiVersion: v1
+kind: Service
+metadata:
+ labels:
+ app.kubernetes.io/name: camel-quarkus-examples-fhir
+ app.kubernetes.io/version: 3.16.0-SNAPSHOT
+ name: fhir-server
+spec:
+ ports:
+ - name: http
+ port: 8080
+ targetPort: 8080
+ selector:
+ app.kubernetes.io/name: camel-quarkus-examples-fhir
+ app.kubernetes.io/version: 3.16.0-SNAPSHOT
+ type: ClusterIP
diff --git a/fhir/src/main/kubernetes/openshift.yml
b/fhir/src/main/kubernetes/openshift.yml
new file mode 100644
index 0000000..668efd5
--- /dev/null
+++ b/fhir/src/main/kubernetes/openshift.yml
@@ -0,0 +1,112 @@
+#
+# Licensed to the Apache Software Foundation (ASF) under one or more
+# contributor license agreements. See the NOTICE file distributed with
+# this work for additional information regarding copyright ownership.
+# The ASF licenses this file to You under the Apache License, Version 2.0
+# (the "License"); you may not use this file except in compliance with
+# the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+ name: fhir-server
+ labels:
+ app.kubernetes.io/name: camel-quarkus-examples-fhir
+ app.kubernetes.io/version: 3.16.0-SNAPSHOT
+spec:
+ replicas: 1
+ selector:
+ matchLabels:
+ app.kubernetes.io/name: camel-quarkus-examples-fhir
+ app.kubernetes.io/version: 3.16.0-SNAPSHOT
+ template:
+ metadata:
+ labels:
+ app.kubernetes.io/name: camel-quarkus-examples-fhir
+ app.kubernetes.io/version: 3.16.0-SNAPSHOT
+ spec:
+ # Work around container permissions issues for /app/target
+ # https://github.com/hapifhir/hapi-fhir-jpaserver-starter/issues/519
+ initContainers:
+ - name: init-container
+ image: busybox
+ command: ['sh', '-c', 'mkdir -p /app/target']
+ volumeMounts:
+ - name: shared-data
+ mountPath: /app/target
+ containers:
+ - name: fhir-server
+ image: docker.io/hapiproject/hapi:v7.4.0
+ ports:
+ - containerPort: 8080
+ name: http
+ env:
+ - name: hapi.fhir.fhir_version
+ value: "R4"
+ - name: hapi.fhir.allow_multiple_delete
+ value: "true"
+ - name: hapi.fhir.reuse_cached_search_results_millis
+ value: "-1"
+ volumeMounts:
+ - name: shared-data
+ mountPath: /app/target
+ - mountPath: /tmp
+ name: tmp
+ livenessProbe:
+ initialDelaySeconds: 30
+ failureThreshold: 5
+ successThreshold: 1
+ periodSeconds: 15
+ timeoutSeconds: 10
+ httpGet:
+ path: /actuator/health
+ port: http
+ readinessProbe:
+ initialDelaySeconds: 30
+ failureThreshold: 5
+ successThreshold: 1
+ periodSeconds: 15
+ timeoutSeconds: 10
+ httpGet:
+ path: /actuator/health
+ port: http
+ startupProbe:
+ initialDelaySeconds: 30
+ failureThreshold: 60
+ successThreshold: 1
+ periodSeconds: 10
+ timeoutSeconds: 10
+ httpGet:
+ path: /actuator/health
+ port: http
+ volumes:
+ - name: shared-data
+ emptyDir: {}
+ - name: tmp
+ emptyDir: {}
+---
+apiVersion: v1
+kind: Service
+metadata:
+ labels:
+ app.kubernetes.io/name: camel-quarkus-examples-fhir
+ app.kubernetes.io/version: 3.16.0-SNAPSHOT
+ name: fhir-server
+spec:
+ ports:
+ - name: http
+ port: 8080
+ targetPort: 8080
+ selector:
+ app.kubernetes.io/name: camel-quarkus-examples-fhir
+ app.kubernetes.io/version: 3.16.0-SNAPSHOT
+ type: ClusterIP
diff --git a/fhir/src/main/resources/application.properties
b/fhir/src/main/resources/application.properties
new file mode 100644
index 0000000..160eece
--- /dev/null
+++ b/fhir/src/main/resources/application.properties
@@ -0,0 +1,46 @@
+## ---------------------------------------------------------------------------
+## Licensed to the Apache Software Foundation (ASF) under one or more
+## contributor license agreements. See the NOTICE file distributed with
+## this work for additional information regarding copyright ownership.
+## The ASF licenses this file to You under the Apache License, Version 2.0
+## (the "License"); you may not use this file except in compliance with
+## the License. You may obtain a copy of the License at
+##
+## http://www.apache.org/licenses/LICENSE-2.0
+##
+## Unless required by applicable law or agreed to in writing, software
+## distributed under the License is distributed on an "AS IS" BASIS,
+## WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+## See the License for the specific language governing permissions and
+## limitations under the License.
+## ---------------------------------------------------------------------------
+
+quarkus.banner.enabled = false
+
+# Camel FHIR configuration
+fhir.http.server.host = ${FHIR_SERVER_SERVICE_HOST:localhost}
+fhir.http.server.port = ${FHIR_SERVER_SERVICE_PORT:8080}
+camel.component.fhir.server-url=http://${fhir.http.server.host}:${fhir.http.server.port}/fhir
+camel.component.fhir.fhir-version=R4
+
+# Kubernetes configuration
+# Uncomment to trust self signed certificates if they are presented by the
Kubernetes API server
+#quarkus.kubernetes-client.trust-certs=true
+quarkus.kubernetes.image-pull-policy=IfNotPresent
+quarkus.kubernetes.ingress.expose=true
+
+# Uncomment to set resource limits
+#quarkus.kubernetes.resources.requests.memory=64Mi
+#quarkus.kubernetes.resources.requests.cpu=250m
+#quarkus.kubernetes.resources.limits.memory=512Mi
+#quarkus.kubernetes.resources.limits.cpu=1000m
+
+# OpenShift configuration
+quarkus.openshift.image-pull-policy=IfNotPresent
+quarkus.openshift.route.expose=true
+
+# Uncomment to set resource limits
+#quarkus.openshift.resources.requests.memory=64Mi
+#quarkus.openshift.resources.requests.cpu=250m
+#quarkus.openshift.resources.limits.memory=512Mi
+#quarkus.openshift.resources.limits.cpu=1000m
diff --git a/fhir/src/test/java/org/acme/fhir/FHIRIT.java
b/fhir/src/test/java/org/acme/fhir/FHIRIT.java
new file mode 100644
index 0000000..be0b6d9
--- /dev/null
+++ b/fhir/src/test/java/org/acme/fhir/FHIRIT.java
@@ -0,0 +1,23 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements. See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.acme.fhir;
+
+import io.quarkus.test.junit.QuarkusIntegrationTest;
+
+@QuarkusIntegrationTest
+class FHIRIT extends FHIRTest {
+}
diff --git a/fhir/src/test/java/org/acme/fhir/FHIRTest.java
b/fhir/src/test/java/org/acme/fhir/FHIRTest.java
new file mode 100644
index 0000000..65594ac
--- /dev/null
+++ b/fhir/src/test/java/org/acme/fhir/FHIRTest.java
@@ -0,0 +1,62 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements. See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.acme.fhir;
+
+import io.quarkus.test.common.WithTestResource;
+import io.quarkus.test.junit.QuarkusTest;
+import io.restassured.RestAssured;
+import io.restassured.path.json.JsonPath;
+import org.junit.jupiter.api.Test;
+
+import static org.hamcrest.Matchers.equalTo;
+import static org.hamcrest.Matchers.notNullValue;
+
+@WithTestResource(FHIRTestResource.class)
+@QuarkusTest
+class FHIRTest {
+ @Test
+ void uploadPatientDetail() {
+ JsonPath response = RestAssured.given()
+ .header("Content-Type", "text/plain; charset=US-ASCII")
+
.body(FHIRTest.class.getResourceAsStream("/data/hl7v2.patient"))
+ .post("/api/patients")
+ .then()
+ .statusCode(200)
+ .body(
+ "id", notNullValue(),
+ "name[0].family", equalTo("Price"),
+ "name[0].given[0]", equalTo("Vincent"))
+ .extract()
+ .body()
+ .jsonPath();
+
+ String id = response.getString("id");
+
+ RestAssured.get("/api/patients/" + id)
+ .then()
+ .statusCode(200)
+ .body(
+ "id", notNullValue(),
+ "name[0].family", equalTo("Price"),
+ "name[0].given[0]", equalTo("Vincent"));
+
+ RestAssured.get("/api/patients/999")
+ .then()
+ .statusCode(404)
+ .body(equalTo("Patient with id 999 not found"));
+ }
+}
diff --git a/fhir/src/test/java/org/acme/fhir/FHIRTestResource.java
b/fhir/src/test/java/org/acme/fhir/FHIRTestResource.java
new file mode 100644
index 0000000..c24e2c1
--- /dev/null
+++ b/fhir/src/test/java/org/acme/fhir/FHIRTestResource.java
@@ -0,0 +1,51 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements. See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.acme.fhir;
+
+import java.time.Duration;
+import java.util.Map;
+
+import io.quarkus.test.common.QuarkusTestResourceLifecycleManager;
+import org.testcontainers.containers.GenericContainer;
+import org.testcontainers.containers.wait.strategy.Wait;
+
+public class FHIRTestResource implements QuarkusTestResourceLifecycleManager {
+ private static final int CONTAINER_PORT = 8080;
+ private GenericContainer container;
+
+ @Override
+ public Map<String, String> start() {
+ container = new GenericContainer<>("docker.io/hapiproject/hapi:v7.4.0")
+ .withExposedPorts(CONTAINER_PORT)
+ .withEnv("hapi.fhir.fhir_version", "R4")
+ .withEnv("hapi.fhir.allow_multiple_delete", "true")
+ .withEnv("hapi.fhir.reuse_cached_search_results_millis", "-1")
+
.waitingFor(Wait.forHttp("/fhir/metadata").withStartupTimeout(Duration.ofMinutes(5)));
+
+ container.start();
+
+ return Map.of("camel.component.fhir.server-url",
+ "http://%s:%s/fhir".formatted(container.getHost(),
container.getMappedPort(CONTAINER_PORT)));
+ }
+
+ @Override
+ public void stop() {
+ if (container != null) {
+ container.stop();
+ }
+ }
+}
diff --git a/fhir/src/test/resources/data/hl7v2.patient
b/fhir/src/test/resources/data/hl7v2.patient
new file mode 100644
index 0000000..a7ee39d
--- /dev/null
+++ b/fhir/src/test/resources/data/hl7v2.patient
@@ -0,0 +1 @@
+MSH|^~\&|Amalga HIS|BUM|New
Tester|MS|20111121103141||ORU^R01|2847970-201111211031|P|2.4|||AL|NE|764|ASCII|||
PID||100005056|100005056||Price^Vincent^""^^""|""|19810813000000|F||CA|Street
1^""^""^""^34000^SGP^^""~""^""^""^""^Danling Street
5th^THA^^""||326-2275^PRN^PH^^66^675~476-5059^ORN^CP^^66^359~(123)456-7890^ORN^FX^^66^222~^NET^X.400^a@a.a~^NET^X.400^du...@hotmail.com|(123)456-7890^WPN^PH^^66|UNK|S|BUD||BP000111899|D99999^""||CA|Bangkok|||THA||THA|""|N
PV1||OPD
||||""^""^""||||CNSLT|||||C|VIP|||6262618|PB1||||||||||||||||||||||||20101208134638
PV2|||^Unknown|""^""||||""|""|0||""|||||||||||||||||||||||||||||HP1
ORC|NW|""|BMC1102771601|""|CM||^^^^^""|||||||||""^""^^^""
OBR|1|""|BMC1102771601|""^Brain
(CT)||20111028124215||||||||||||||||||CTSCAN|F||^^^^^ROUTINE|||""||||||""|||||||||||^""
OBX|1|FT|""^Brain (CT)||++++ text of report goes here
+++|||REQAT|||FINAL|||20111121103040||75929^Gosselin^Angelina
\ No newline at end of file
