This is an automated email from the ASF dual-hosted git repository.
dependabot[bot] pushed a change to branch
dependabot/go_modules/airavata-agent/github.com/fatedier/frp-0.68.1
in repository https://gitbox.apache.org/repos/asf/airavata.git
discard bf2c1e5379 Bump github.com/fatedier/frp from 0.62.1 to 0.68.1 in
/airavata-agent
add 9403d87682 dev: single-container Docker-in-Docker Tilt environment
with HTTPS ingress (#622)
add a5829a069d dev: fix DevStorage cold-start init in the containerized
server (#623)
add bcd675749d fix: eliminate server cold-start startup warnings (#624)
add 6f0bca0796 fix: seed default sharing data idempotently without ERROR
noise (#625)
add e9db41f830 chore: reword duplicate-seed WARNs and quiet Kafka config
dumps (#626)
add 6a0ca453d0 Remove leftover Apache Thrift naming (#627)
add bb09012c61 Remove dead code from airavata-api (#628)
add 22b59bd5f6 Remove more dead code from airavata-api (#629)
add 3a052096fa style: fix Spotless formatting violations on master (#630)
add 69b5cf1551 Remove airavata-jupyterhub (moved to
apache/airavata-portals) (#631)
add 59c4a0523f build: centralize dependency versions and drop redundant
config (#632)
add 20aea9112a build: consolidate the Testcontainers Ryuk-disable flag
into root surefire (#633)
add 36cff7403e refactor: move JsonMapConverter into the shared db package
(#634)
add 9197d9a92e refactor: dedup iam QueryConstants against the shared
db.QueryConstants (#635)
add 78ed5b8441 refactor: drop the redundant sharing-service SharingHelper
(#636)
add b0243ae2ec refactor: collapse duplicated method families in
CredentialStoreService (#637)
add b9baada543 docs: document the SLF4J placeholder logging convention in
CLAUDE.md (#638)
add 60808eccc6 refactor: collapse duplicated method families in
storage-service (#639)
add abb331a933 refactor: collapse duplicated method families in
research-service (#640)
add bfa377caad fix: read the canonical kafka.broker.url key in
KafkaProxyService (#641)
add d4e3bf340a refactor: extract shared AuthTokenExtractor for the gRPC
and HTTP auth paths (#642)
add adb5241096 refactor: move the research Resource catalog from
sharing-service into research-service (#643)
add 0e3cef685d ci: drop the JavaScript/TypeScript CodeQL analysis (#644)
add b036480975 build(deps): bump github.com/fatedier/frp in /airavata-agent
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Summary of changes:
.dockerignore | 16 +-
.github/workflows/codeql.yml | 2 -
.gitignore | 3 +
CLAUDE.md | 82 ++++-
Tiltfile | 149 +++++++--
.../apache/airavata/agent/mapper/AgentMapper.java | 28 --
.../airavata/agent/model/AgentExecutionEntity.java | 67 ----
.../agent/model/AgentExecutionStatusEntity.java | 95 ------
.../agent/repository/AgentExecutionRepository.java | 27 --
.../repository/AgentExecutionStatusRepository.java | 27 --
airavata-api/compute-service/pom.xml | 16 +-
.../compute/model/ComputeJobSubmissionEntity.java | 1 +
.../airavata/compute/util/AdaptorParams.java | 43 ---
.../airavata/compute/util/AppDeploymentUtil.java | 43 ---
.../airavata/compute/util/AppInterfaceUtil.java | 70 ----
.../airavata/compute/util/SSHJStorageAdaptor.java | 28 +-
.../airavata/compute/util/SshAdaptorParams.java | 133 --------
.../airavata/compute/util/SshAgentAdaptor.java | 336 -------------------
.../compute/util/StorageResourceAdaptorImpl.java | 86 -----
airavata-api/credential-service/pom.xml | 4 +-
.../credential/service/CredentialStoreService.java | 199 ++++++------
.../credential/service/SSHAccountManager.java | 4 +-
.../apache/airavata/credential/util/SSHUtil.java | 29 --
.../apache/airavata/credential/util/Utility.java | 28 --
airavata-api/iam-service/pom.xml | 14 -
.../iam/repository/AbstractRepository.java | 6 +-
.../iam/repository/UserProfileRepository.java | 9 +-
.../airavata/iam/util/AuthorizationException.java | 2 +-
.../apache/airavata/iam/util/QueryConstants.java | 31 +-
airavata-api/orchestration-service/pom.xml | 16 +-
.../orchestration/mapper/ExecutionMapper.java | 14 -
.../orchestration/util/DevStorageInitializer.java | 41 ++-
.../orchestration/util/ExpCatalogDBInitConfig.java | 24 +-
.../workflow/PostWorkflowManager.java | 4 +-
airavata-api/pom.xml | 7 +-
airavata-api/research-service/pom.xml | 4 +-
.../research/config/DevDataInitializer.java | 10 +-
.../research/grpc/ResearchResourceGrpcHandler.java | 8 +-
.../research/model/DatasetResourceEntity.java | 2 -
.../airavata/research}/model/PrivacyEnum.java | 2 +-
.../research/model/RepositoryResourceEntity.java | 2 -
.../research/model/ResearchProjectEntity.java | 1 -
.../airavata/research}/model/ResourceEntity.java | 2 +-
.../research}/model/ResourceStarEntity.java | 2 +-
.../airavata/research}/model/ResourceTypeEnum.java | 2 +-
.../apache/airavata/research}/model/StateEnum.java | 2 +-
.../airavata/research}/model/StatusEnum.java | 2 +-
.../apache/airavata/research}/model/TagEntity.java | 2 +-
.../repository/ExperimentSummaryRepository.java | 211 ++++--------
.../repository/ResearchProjectRepository.java | 2 +-
.../research}/repository/ResourceRepository.java | 6 +-
.../repository/ResourceStarRepository.java | 8 +-
.../research}/repository/TagRepository.java | 4 +-
.../research/service/ResearchHubService.java | 35 +-
.../research/service/ResearchProjectService.java | 8 +-
.../research/service/ResearchResourceService.java | 24 +-
airavata-api/sharing-service/pom.xml | 2 -
.../event/SharingServiceDBEventHandler.java | 4 +-
.../airavata/sharing/grpc/SharingGrpcService.java | 40 +--
.../sharing/model/DuplicateEntryException.java | 2 +-
.../airavata/sharing/model/SharingEntity.java | 10 +-
.../apache/airavata/sharing/model/SharingPK.java | 10 +-
.../sharing/model/SharingRegistryException.java | 2 +-
.../sharing/service/ResourceSharingService.java | 2 +-
.../airavata/sharing/service/SharingService.java | 11 +
.../airavata/sharing/util/SharingHelper.java | 117 -------
...lConversion.java => SharingModelConverter.java} | 2 +-
.../src/main/proto/sharing_service.proto | 4 +-
.../org/apache/airavata/db/AbstractRepository.java | 6 +-
.../org/apache/airavata/db}/JsonMapConverter.java | 2 +-
.../exception/IamAdminServicesException.java | 2 +-
.../messaging/service/LocalEventPublisher.java | 45 ---
.../airavata/messaging/util/CountWriterTask.java | 52 ---
.../airavata/messaging/util/LatencyWriterTask.java | 53 ---
.../airavata/messaging/util/StatCounter.java | 99 ------
.../apache/airavata/server/MonitoringServer.java | 191 -----------
.../apache/airavata/server/ServiceRegistry.java | 152 ---------
.../org/apache/airavata/server/ServiceStatus.java | 62 ----
.../SubTaskModelDecoder.java} | 4 +-
.../java/org/apache/airavata/task/TaskContext.java | 3 +-
.../java/org/apache/airavata/util/StringUtil.java | 55 ----
.../java/org/apache/airavata/util/SwingUtil.java | 356 ---------------------
.../group_resource_profile.proto | 2 +-
.../apache/airavata/model/dbevent/db_event.proto | 2 +-
.../src/test/resources/META-INF/persistence.xml | 8 +-
airavata-api/storage-service/pom.xml | 2 -
.../storage/grpc/UserStorageGrpcService.java | 6 +-
.../airavata/storage/mapper/StorageMapper.java | 9 +-
.../airavata/storage/model/JsonMapConverter.java | 51 ---
.../storage/model/StorageDataMovementEntity.java | 1 +
.../storage/repository/DataMovementRepository.java | 50 ++-
.../airavata/storage/task/DataStagingTask.java | 68 ++--
airavata-jupyterhub/Dockerfile | 14 -
airavata-jupyterhub/custom_templates/login.html | 52 ---
airavata-jupyterhub/docker-compose.yaml | 24 --
airavata-jupyterhub/jupyterhub_config.py | 139 --------
airavata-jupyterhub/user-container/Dockerfile | 12 -
airavata-jupyterhub/user-container/Makefile | 3 -
airavata-jupyterhub/user-container/init.sh | 28 --
airavata-server/pom.xml | 8 +-
.../server/grpc/AiravataArmeriaConfig.java | 9 +
.../server/grpc/config/AuthTokenExtractor.java | 69 ++++
.../server/grpc/config/GrpcAuthInterceptor.java | 27 +-
.../server/grpc/config/HttpAuthDecorator.java | 22 +-
.../health/InfrastructureHealthIndicator.java | 27 +-
.../airavata/server/kafka/KafkaProxyService.java | 2 +-
.../src/main/resources/application.properties | 1 +
airavata-server/src/main/resources/logback.xml | 4 +
compose.dind.yml | 26 ++
compose.yml | 146 ++++++++-
conf/traefik/dynamic/tls.yml | 11 +
pom.xml | 50 ++-
112 files changed, 929 insertions(+), 3255 deletions(-)
delete mode 100644
airavata-api/agent-service/src/main/java/org/apache/airavata/agent/mapper/AgentMapper.java
delete mode 100644
airavata-api/agent-service/src/main/java/org/apache/airavata/agent/model/AgentExecutionEntity.java
delete mode 100644
airavata-api/agent-service/src/main/java/org/apache/airavata/agent/model/AgentExecutionStatusEntity.java
delete mode 100644
airavata-api/agent-service/src/main/java/org/apache/airavata/agent/repository/AgentExecutionRepository.java
delete mode 100644
airavata-api/agent-service/src/main/java/org/apache/airavata/agent/repository/AgentExecutionStatusRepository.java
delete mode 100644
airavata-api/compute-service/src/main/java/org/apache/airavata/compute/util/AdaptorParams.java
delete mode 100644
airavata-api/compute-service/src/main/java/org/apache/airavata/compute/util/AppDeploymentUtil.java
delete mode 100644
airavata-api/compute-service/src/main/java/org/apache/airavata/compute/util/AppInterfaceUtil.java
delete mode 100644
airavata-api/compute-service/src/main/java/org/apache/airavata/compute/util/SshAdaptorParams.java
delete mode 100644
airavata-api/compute-service/src/main/java/org/apache/airavata/compute/util/SshAgentAdaptor.java
delete mode 100644
airavata-api/compute-service/src/main/java/org/apache/airavata/compute/util/StorageResourceAdaptorImpl.java
rename airavata-api/{sharing-service/src/main/java/org/apache/airavata/sharing
=>
research-service/src/main/java/org/apache/airavata/research}/model/PrivacyEnum.java
(95%)
rename airavata-api/{sharing-service/src/main/java/org/apache/airavata/sharing
=>
research-service/src/main/java/org/apache/airavata/research}/model/ResourceEntity.java
(99%)
rename airavata-api/{sharing-service/src/main/java/org/apache/airavata/sharing
=>
research-service/src/main/java/org/apache/airavata/research}/model/ResourceStarEntity.java
(97%)
rename airavata-api/{sharing-service/src/main/java/org/apache/airavata/sharing
=>
research-service/src/main/java/org/apache/airavata/research}/model/ResourceTypeEnum.java
(96%)
rename airavata-api/{sharing-service/src/main/java/org/apache/airavata/sharing
=>
research-service/src/main/java/org/apache/airavata/research}/model/StateEnum.java
(95%)
rename airavata-api/{sharing-service/src/main/java/org/apache/airavata/sharing
=>
research-service/src/main/java/org/apache/airavata/research}/model/StatusEnum.java
(95%)
rename airavata-api/{sharing-service/src/main/java/org/apache/airavata/sharing
=>
research-service/src/main/java/org/apache/airavata/research}/model/TagEntity.java
(97%)
rename airavata-api/{sharing-service/src/main/java/org/apache/airavata/sharing
=>
research-service/src/main/java/org/apache/airavata/research}/repository/ResourceRepository.java
(96%)
rename airavata-api/{sharing-service/src/main/java/org/apache/airavata/sharing
=>
research-service/src/main/java/org/apache/airavata/research}/repository/ResourceStarRepository.java
(86%)
rename airavata-api/{sharing-service/src/main/java/org/apache/airavata/sharing
=>
research-service/src/main/java/org/apache/airavata/research}/repository/TagRepository.java
(93%)
delete mode 100644
airavata-api/sharing-service/src/main/java/org/apache/airavata/sharing/util/SharingHelper.java
rename
airavata-api/sharing-service/src/main/java/org/apache/airavata/sharing/util/{ThriftDataModelConversion.java
=> SharingModelConverter.java} (97%)
rename
airavata-api/{compute-service/src/main/java/org/apache/airavata/compute/model
=> src/main/java/org/apache/airavata/db}/JsonMapConverter.java (97%)
delete mode 100644
airavata-api/src/main/java/org/apache/airavata/messaging/service/LocalEventPublisher.java
delete mode 100644
airavata-api/src/main/java/org/apache/airavata/messaging/util/CountWriterTask.java
delete mode 100644
airavata-api/src/main/java/org/apache/airavata/messaging/util/LatencyWriterTask.java
delete mode 100644
airavata-api/src/main/java/org/apache/airavata/messaging/util/StatCounter.java
delete mode 100644
airavata-api/src/main/java/org/apache/airavata/server/MonitoringServer.java
delete mode 100644
airavata-api/src/main/java/org/apache/airavata/server/ServiceRegistry.java
delete mode 100644
airavata-api/src/main/java/org/apache/airavata/server/ServiceStatus.java
rename airavata-api/src/main/java/org/apache/airavata/{util/ThriftUtils.java
=> task/SubTaskModelDecoder.java} (96%)
delete mode 100644
airavata-api/src/main/java/org/apache/airavata/util/SwingUtil.java
delete mode 100644
airavata-api/storage-service/src/main/java/org/apache/airavata/storage/model/JsonMapConverter.java
delete mode 100644 airavata-jupyterhub/Dockerfile
delete mode 100644 airavata-jupyterhub/custom_templates/login.html
delete mode 100644 airavata-jupyterhub/docker-compose.yaml
delete mode 100644 airavata-jupyterhub/jupyterhub_config.py
delete mode 100644 airavata-jupyterhub/user-container/Dockerfile
delete mode 100755 airavata-jupyterhub/user-container/Makefile
delete mode 100755 airavata-jupyterhub/user-container/init.sh
create mode 100644
airavata-server/src/main/java/org/apache/airavata/server/grpc/config/AuthTokenExtractor.java
create mode 100644 compose.dind.yml
create mode 100644 conf/traefik/dynamic/tls.yml
