Seems the "Unix Makefiles" generator under cmake-2.8.8 is erroneously adding
double quotes around my list of include directories. I'm on a Linux-2.6.32
system.
Here is a partial output from cmake invocation.
cmake -DCMAKE_INSTALL_PREFIX=gmt5 -DCMAKE_BUILD_TYPE=RelWithDebInfo
-DCMAKE_C_COMPILER=mpicc -DCMAKE_CXX_COMPILER=mpicxx --debug-trycompile ..
-- Looking for nc_def_var_deflate
-- CMAKE_SYMBOL_EXISTS_INCLUDES is
-DINCLUDE_DIRECTORIES:STRING=-I/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/include
-DpgiFortran -DMPICH_IGNORE_CXX_SEEK
-I/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/include/
-I/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/include/zlib
-I/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/include/szlib
-I/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/include/jpeg
-I/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/include/hdf5
-I/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/include/hdf
-I/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/include/uuid
-I/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/include/netcdf
-- CHECK_SYMBOL_EXISTS_LIBS is
-DLINK_LIBRARIES:STRING=-L/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/lib
-L/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/lib
-lnetcdf -lm
/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/lib/libhdf5_hl.a
/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/lib/libhdf5.a
/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/lib/libz.a
/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/lib/libsz.a
/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/lib/libcurl.a
-lsz -ljpeg -lm
-- Looking for nc_def_var_deflate - not found.
Here is the output from CMakeFiles/CMakeError.log
cat CMakeFiles/CMakeError.log
Determining if the nc_def_var_deflate exist failed with the following output:
Change Dir: /u/dkokron/play/GMTdev/gmt5/build/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/gmake "cmTryCompileExec3166448200/fast"
/usr/bin/gmake -f CMakeFiles/cmTryCompileExec3166448200.dir/build.make
CMakeFiles/cmTryCompileExec3166448200.dir/build
gmake[1]: Entering directory
`/home1/dkokron/play/GMTdev/gmt5/build/CMakeFiles/CMakeTmp'
/u/dkokron/play/CMAKE/cmake-2.8.8/install/bin/cmake -E cmake_progress_report
/u/dkokron/play/GMTdev/gmt5/build/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object
CMakeFiles/cmTryCompileExec3166448200.dir/CheckSymbolExists.c.o
/nasa/sgi/mpt/2.06a67/bin/mpicc -std=gnu99
-I"/u/dkokron/play/GMTdev/gmt5/build/CMakeFiles/CMakeTmp/-I/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/include
-DpgiFortran -DMPICH_IGNORE_CXX_SEEK
-I/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/include/
-I/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/include/zlib
-I/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/include/szlib
-I/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/include/jpeg
-I/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/include/hdf5
-I/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/include/hdf
-I/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/include/uuid
-I/u/dkokron/Baselibs/Baselibs-4_0_0_UNSTABLE/Intel-12.1.4.319_mpt-2.06r6/Linux/include/netcdf"
-o CMakeFiles/
cmTryCompileExec3166448200.dir/CheckSymbolExists.c.o -c
/u/dkokron/play/GMTdev/gmt5/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c
/u/dkokron/play/GMTdev/gmt5/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c:2:20:
error: netcdf.h: No such file or directory
/u/dkokron/play/GMTdev/gmt5/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c: In
function 'main':
/u/dkokron/play/GMTdev/gmt5/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c:8:
error: 'nc_def_var_deflate' undeclared (first use in this function)
/u/dkokron/play/GMTdev/gmt5/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c:8:
error: (Each undeclared identifier is reported only once
/u/dkokron/play/GMTdev/gmt5/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c:8:
error: for each function it appears in.)
gmake[1]: *** [CMakeFiles/cmTryCompileExec3166448200.dir/CheckSymbolExists.c.o]
Error 1
gmake[1]: Leaving directory
`/home1/dkokron/play/GMTdev/gmt5/build/CMakeFiles/CMakeTmp'
gmake: *** [cmTryCompileExec3166448200/fast] Error 2
File /u/dkokron/play/GMTdev/gmt5/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c:
/* */
#include <netcdf.h>
int main(int argc, char** argv)
{
(void)argv;
#ifndef nc_def_var_deflate
return ((int*)(&nc_def_var_deflate))[argc];
#else
(void)argc;
return 0;
#endif
}
Daniel Kokron
NASA Ames (ARC-TN)
SciCon group
301-286-3959
--
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