Hi Evgenii, Just to clarify: you mean I should re-compile OpenMPI and add “-lutil” to LDFLAGS at configure time?
Yours Michael > On 23 Nov 2015, at 18:07 , Evgenii Stepanov <eugeni.stepa...@gmail.com> wrote: > > This is caused by missing -lutil. > FTR, http://llvm.org/viewvc/llvm-project?rev=245619&view=rev > > On Mon, Nov 23, 2015 at 7:33 AM, Schlottke-Lakemper, Michael via > cfe-users <cfe-users@lists.llvm.org> wrote: >> Hi folks, >> >> When running “mpirun” of an msan-instrumented installation of OpenMPI, I get >> the following error: >> >> $> mpirun -n 1 hostname >> [aia308:48324] *** Process received signal *** >> [aia308:48324] Signal: Segmentation fault (11) >> [aia308:48324] Signal code: Address not mapped (1) >> [aia308:48324] Failing at address: (nil) >> [aia308:48324] [ 0] >> /pds/opt/openmpi-1.8.7-clang-msan/lib64/libopen-pal.so.6(+0x123ca1)[0x7f9e21c90ca1] >> [aia308:48324] [ 1] mpirun[0x42b602] >> [aia308:48324] [ 2] /lib64/libpthread.so.0(+0xf890)[0x7f9e21250890] >> [aia308:48324] *** End of error message *** >> Segmentation fault >> >> Running it through gdb and printing the stacktrace, I get the following >> additional information: >> $> gdb -ex r --args mpirun -n 1 hostname >> #0 0x0000000000000000 in ?? () >> #1 0x000000000042bd5b in __interceptor_openpty () at >> /pds/opt/install/llvm/llvm-20151121-r253770-src/projects/compiler-rt/lib/msan/msan_interceptors.cc:1355 >> #2 0x00007ffff7705a7c in opal_openpty (amaster=0x7fffffffacf8, >> aslave=0x7fffffffacfc, name=0x0, termp=0x0, winp=0x0) at >> ../../../openmpi-1.8.7/opal/util/opal_pty.c:116 >> #3 0x00007ffff7b31e9a in orte_iof_base_setup_prefork (opts=0x7ffffffface8) >> at ../../../../openmpi-1.8.7/orte/mca/iof/base/iof_base_setup.c:89 >> #4 0x00007fffefea465a in odls_default_fork_local_proc >> (context=0x72400000bb80, child=0x72400000b880, environ_copy=0x73400001ec00, >> jobdat=0x722000009d80) at >> ../../../../../openmpi-1.8.7/orte/mca/odls/default/odls_default_module.c:860 >> #5 0x00007ffff7b3cfb8 in orte_odls_base_default_launch_local (fd=-1, sd=4, >> cbdata=0x70600002da80) at >> ../../../../openmpi-1.8.7/orte/mca/odls/base/odls_base_default_fns.c:1544 >> #6 0x00007ffff77459d7 in event_process_active_single_queue >> (base=0x72a00000fc80, activeq=0x71000000bdc0) at >> ../../../../../../openmpi-1.8.7/opal/mca/event/libevent2021/libevent/event.c:1367 >> #7 0x00007ffff773bb92 in event_process_active (base=0x72a00000fc80) at >> ../../../../../../openmpi-1.8.7/opal/mca/event/libevent2021/libevent/event.c:1437 >> #8 0x00007ffff7738fd7 in opal_libevent2021_event_base_loop >> (base=0x72a00000fc80, flags=1) at >> ../../../../../../openmpi-1.8.7/opal/mca/event/libevent2021/libevent/event.c:1647 >> #9 0x000000000048f651 in orterun (argc=4, argv=0x7fffffffcea8) at >> ../../../../openmpi-1.8.7/orte/tools/orterun/orterun.c:1133 >> #10 0x000000000048b20c in main (argc=4, argv=0x7fffffffcea8) at >> ../../../../openmpi-1.8.7/orte/tools/orterun/main.c:13 >> >> I suspect that has something to do with using some non-msan-instrumented >> system libraries, but how can I find out which library is the problem and >> what to do to fix it? Any ideas? >> >> Regards, >> >> Michael >> >> P.S.: I compiled OpenMPI with the following configure command (the wildcard >> blacklist was necessary because OpenMPI just has too many issues with msan…): >> >> printf "fun:*\n" > blacklist.txt && \ >> CC=clang CXX=clang++ \ >> CFLAGS="-g -fsanitize=memory -fno-omit-frame-pointer >> -fsanitize-memory-track-origins -fsanitize-blacklist=`pwd`/blacklist.txt" \ >> CXXFLAGS="-g -fsanitize=memory -fno-omit-frame-pointer >> -fsanitize-memory-track-origins -fsanitize-blacklist=`pwd`/blacklist.txt" \ >> ../openmpi-1.8.7/configure --prefix=/pds/opt/openmpi-1.8.7-clang-msan >> --disable-mpi-fortran >> _______________________________________________ >> cfe-users mailing list >> cfe-users@lists.llvm.org >> http://lists.llvm.org/cgi-bin/mailman/listinfo/cfe-users _______________________________________________ cfe-users mailing list cfe-users@lists.llvm.org http://lists.llvm.org/cgi-bin/mailman/listinfo/cfe-users
