Thank You Boaz for the suggestion.
I tried as suggested in the issues tab.
Hi Group:
Now I get the message that is appended.
I have tried to install it from the packagemanager as well as the "download and
install".
CCP4i and CCP4mg are working well.
Cheers
Prasun
Running CCP4i2 browser from:
/home/prasunkumar/Downloads/destination/ccp4-8.0/lib/python3.7/site-packages/ccp4i2
Python 3.7.12 (default, Jan 6 2022, 21:30:12)
[GCC 8.2.1 20180905 (Red Hat 8.2.1-3)]
Qt version 5.15.2
Sandboxing disabled by user.
Installed Qt WebEngine locales directory not found at location
/home/prasunkumar/Downloads/destination/ccp4-8.0/translations/qtwebengine_locales.
Trying
application directory...
Qt WebEngine locales directory not found at location
/home/prasunkumar/Downloads/destination/ccp4-8.0/libexec/qtwebengine_locales.
Trying fallback direc
tory... Translations MAY NOT not be correct.
Path override failed for key ui::DIR_LOCALES and path
'/home/prasunkumar/.browser.py'
[1210/220628.202976:WARNING:resource_bundle_qt.cpp(115)]
locale_file_path.empty() for locale
Installed Qt WebEngine locales directory not found at location
/home/prasunkumar/Downloads/destination/ccp4-8.0/translations/qtwebengine_locales.
Trying
application directory...
Installed Qt WebEngine locales directory not found at location
/home/prasunkumar/Downloads/destination/ccp4-8.0/translations/qtwebengine_locales.
Trying
application directory...
Qt WebEngine locales directory not found at location
/home/prasunkumar/Downloads/destination/ccp4-8.0/libexec/qtwebengine_locales.
Trying fallback direc
tory... Translations MAY NOT not be correct.
Qt WebEngine locales directory not found at location
/home/prasunkumar/Downloads/destination/ccp4-8.0/libexec/qtwebengine_locales.
Trying fallback direc
tory... Translations MAY NOT not be correct.
Path override failed for key ui::DIR_LOCALES and path
'/home/prasunkumar/.QtWebEngineProcess'
Path override failed for key ui::DIR_LOCALES and path
'/home/prasunkumar/.QtWebEngineProcess'
[1210/220628.222712:WARNING:resource_bundle_qt.cpp(115)]
locale_file_path.empty() for locale
[1210/220628.223233:WARNING:resource_bundle_qt.cpp(115)]
locale_file_path.empty() for locale
Installed Qt WebEngine locales directory not found at location
/home/prasunkumar/Downloads/destination/ccp4-8.0/translations/qtwebengine_locales.
Trying
application directory...
Qt WebEngine locales directory not found at location
/home/prasunkumar/Downloads/destination/ccp4-8.0/libexec/qtwebengine_locales.
Trying fallback direc
tory... Translations MAY NOT not be correct.
Path override failed for key ui::DIR_LOCALES and path
'/home/prasunkumar/.QtWebEngineProcess'
[1210/220628.316351:WARNING:resource_bundle_qt.cpp(115)]
locale_file_path.empty() for locale
ccp4i2 version 1.1.0
ccp4i2 source revision 6539
CPrintHandler saving print output to directory:
/home/prasunkumar/.CCP4I2/logs/started_1670709988
None
None
Starting Project Manager
Current schema version: ('0.1.22', '23-09-2016')
CCP4i2 opening database file /home/prasunkumar/.CCP4I2/db/database.sqlite
updateDbSchema 0.1.22 23-09-2016
Starting Project Manager - DONE
Starting Job Controller
Starting Job Controller - DONE
Traceback (most recent call last):
File
"/home/prasunkumar/Downloads/destination/ccp4-8.0/lib/python3.7/site-packages/ccp4i2/bin/browser.py",
line 109, in <module>
startBrowser(sys.argv[1:], app=app, splash=splash)
File
"/home/prasunkumar/Downloads/destination/ccp4-8.0/lib/python3.7/site-packages/ccp4i2/utils/startup.py",
line 248, in startBrowser
createMissingDATABASEdbXML()
File
"/home/prasunkumar/Downloads/destination/ccp4-8.0/lib/python3.7/site-packages/ccp4i2/utils/startup.py",
line 177, in createMissingDATABASEdbXML
tree = parse_from_unicode(s)
File
"/home/prasunkumar/Downloads/destination/ccp4-8.0/lib/python3.7/site-packages/ccp4i2/utils/startup.py",
line 173, in parse_from_unicode
return etree.fromstring(s, parser=utf8_parser)
File "src/lxml/etree.pyx", line 3211, in lxml.etree.fromstring
File "src/lxml/parser.pxi", line 1877, in lxml.etree._parseMemoryDocument
File "src/lxml/parser.pxi", line 1765, in lxml.etree._parseDoc
File "src/lxml/parser.pxi", line 1127, in lxml.etree._BaseParser._parseDoc
File "src/lxml/parser.pxi", line 601, in
lxml.etree._ParserContext._handleParseResultDoc
File "src/lxml/parser.pxi", line 711, in lxml.etree._handleParseResult
File "src/lxml/parser.pxi", line 640, in lxml.etree._raiseParseError
File "<string>", line 1
lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1
________________________________
From: Boaz Shaanan <[email protected]>
Sent: 10 December 2022 19:53
To: Prasun Kumar <[email protected]>
Cc: [email protected] <[email protected]>
Subject: Re: [ccp4bb] issue with running ccp4i2
Hi,
Did you check the 'issues tab' on the ccp4 site? It lists remedies for ccp4i2
on various systems. It worked for me.
Cheers,
Boaz
Boaz Shaanan, Ph.D.
Dept. of Life Sciences
Ben Gurion University
Beer Sheva, Israel
On Dec 10, 2022 21:32, Prasun Kumar <[email protected]> wrote:
Hi Group
I currently updated my ccp4 to the latest version. I have also made python3.7
the default version.
The log when I run ccp4i2 & from the command line is appended below. I suspect
it is the python version but please guide me for the same.
Python 3.7.12 (default, Jan 6 2022, 21:30:12)
[GCC 8.2.1 20180905 (Red Hat 8.2.1-3)]
Qt version 5.15.2
qt.qpa.plugin: Could not load the Qt platform plugin "xcb" in
"/home/prasunkumar/Desktop/crystallography/ccp4-8.0.006-shelx-arpwarp-linux64/ccp4-8.0/QtP
lugins/" even though it was found.
This application failed to start because no Qt platform plugin could be
initialized. Reinstalling the application may fix this problem.
Available platform plugins are: eglfs, linuxfb, minimal, minimalegl, offscreen,
vnc, webgl, xcb.
[1]+ Aborted (core dumped) ccp4i2
Cheers
PK
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