Hi CasperAmigos,

I want to thank you for sharing all this information that is extremely
helpful, I was having  this problem for some time that I thought was
due to my lack of experience, and it turns out that... it was due to
my lack of experience but also for these configs...
I did all the steps mentioned, on the following configuration and I
was able to compile the SNAP tutorials. I couldn't test it on HW for
now.

Ubuntu 18.04.5 LTS
Matlab 2018a
Xilinx vivado 2019.1.3

I hope this information is a bit useful.

Cheers.





El vie, 29 ene 2021 a las 7:40, Adam Isaacson (<[email protected]>) escribió:
>
> Hi Casperites,
>
> Just some corrections from my previous email below - got the numpy version 
> update incorrect:
>
> Okay, so it turns out that creating the virtual environment for python using 
> "virtualen -p python3 <name_of_env>" does not work. This is what you need to 
> do in order to create a successful virtual environment and get your designs 
> to build. I tested it on a brand new virtual environment and it works. Thanks 
> to Clifford van Wyk (Peralex), Morag Brown and Jack Hickish for their 
> assistance. The docs will definitely need to be updated - we will add this to 
> the agenda for the CASPER meeting.
>
> The following needs to be done if you want to generate a proper virtual 
> environment that will build in the toolflow - Kaj, I recommend the below way:
>
> 1) Create the virtual environment: "python3 -m venv <some-venv-name>". The 
> old way of using virtualenv -p python 3 <some-venv-name> just doesn't work. 
> Thanks to Jack and Morag for pointing this out to me.
> 2) Activate the environment: "source <some-venv-name>/bin/activate"
> 3) Go to the mlib_devel directory and edit the requirements.txt file. It 
> should have "numpy<1.19" (thanks for your sleuth work, Jack!). Now save the 
> file.
> 4) Go to mlib_devel directory and type exactly: "pip install -r 
> requirements.txt". This will install without error or issues. if you check 
> the site-packages in the virtual environment you will see what I mean - all 
> the python packages will be installed properly in your virtual environment.
> 5) You will need to edit line 32 of castro.py (located in the same folder as 
> mlib_devel/jasper_library), so that it is "c = yaml.load(fh, 
> Loader=yaml.Loader) . Refer to https://github.com/yaml/pyyaml/issues/266 for 
> more info on this version change issue. I tested the build with my original 
> working virtualenv and the newly generated virtualenv and it works for both. 
> Don't worry, I will be committing this change once I have done a bit more 
> investigation - maybe adding versions in requirements.txt is not a bad idea 
> for future support.
>
> You can now start your matlab session and build your designs :). Hooray!
>
> NB: I am now going to commit and do a pull request for casper-astro to review.
>
> Kind regards,
>
> Adam Isaacson
> South African Radio Astronomy Observatory (SARAO)
> Hardware Manager
> Cell: (+27) 825639602
> Tel:  (+27) 215067300
> email: [email protected]
>
>
>
> On Thu, Jan 28, 2021 at 9:41 PM Adam Isaacson <[email protected]> wrote:
>>
>> Hi Casperites,
>>
>> Okay, so it turns out that creating the virtual environment for python using 
>> "virtualen -p python3 <name_of_env>" does not work. This is what you need to 
>> do in order to create a successful virtual environment and get your designs 
>> to build. I tested it on a brand new virtual environment and it works. 
>> Thanks to Clifford van Wyk (Peralex), Morag Brown and Jack Hickish for their 
>> assistance. The docs will definitely need to be updated - we will add this 
>> to the agenda for the CASPER meeting.
>>
>> The following needs to be done if you want to generate a proper virtual 
>> environment that will build in the toolflow - Kaj, I recommend the below way:
>>
>> 1) Create the virtual environment: "python3 -m venv <some-venv-name>". The 
>> old way of using virtualenv -p python 3 <some-venv-name> just doesn't work. 
>> Thanks to Jack and Morag for pointing this out to me.
>> 2) Activate the environment: "source <some-venv-name>/bin/activate"
>> 3) Go to the mlib_devel directory and edit the requirements.txt file. It 
>> should have "numpy<1.9" (thanks for your sleuth work, Jack!). Now save the 
>> file.
>> 3) Go to mlib_devel directory and type exactly: "pip install -r 
>> requirements.txt". This will install without error or issues. if you check 
>> the site-packages in the virtual environment you will see what I mean - all 
>> the python packages will be installed properly in your virtual environment.
>> 4) You will need to edit line 32 of castro.py (located in the same folder as 
>> mlib_devel/jasper_library), so that it is "c = yaml.load(fh, 
>> Loader=yaml.Loader) . Refer to https://github.com/yaml/pyyaml/issues/266 for 
>> more info on this version change issue. I tested the build with my original 
>> working virtualenv and the newly generated virtualenv and it works for both. 
>> Don't worry, I will be committing this change once I have done a bit more 
>> investigation - maybe adding versions in requirements.txt is not a bad idea 
>> for future support.
>>
>> You can now start your matlab session and build your designs :). Hooray!
>>
>> Kind regards,
>>
>> Adam Isaacson
>> South African Radio Astronomy Observatory (SARAO)
>> Hardware Manager
>> Cell: (+27) 825639602
>> Tel:  (+27) 215067300
>> email: [email protected]
>>
>>
>>
>> On Thu, Jan 28, 2021 at 9:55 AM Adam Isaacson <[email protected]> wrote:
>>>
>>> Hi David,
>>>
>>> Yes, it was a bit of a rabbit hole exercise, but we (between Kaj and 
>>> Peralex) worked our way through it and now debugging other issues :).
>>>
>>> You raise a valid point. There is no reason we shouldn't port to Ubuntu 
>>> 18.04LTS or higher. It makes sense with what Kaj and Peralex are 
>>> experiencing.
>>>
>>> Please note, my team (SARAO) is baselining the SKARAB work at Ubuntu 
>>> 16.04LTS. We are coming to the end of the MeerKAT development for the F and 
>>> X engines. I do believe there are those that have got the toolflow to work 
>>> on Ubuntu 18.04LTS. I know Wesley New has struggled to get the SKARAB 
>>> toolflow to work using Ubuntu 18.04LTS. I haven't tried it on my side yet.
>>>
>>> My team's focus this year is to update the toolflow to work with Vitis and 
>>> target those Alveo boards. This will definitely involve moving to a newer 
>>> version of Ubuntu. For now that is likely to be Ubuntu 18.04LTS, Vitis 
>>> 2020.2 and Vivado 2020.2.
>>>
>>> I think this is something we should discuss at the next CASPER meeting on 
>>> the 11th Feb. We should allocate a resource for this, but SARAO is focusing 
>>> on other areas for now.
>>>
>>> Thanks for your email :).
>>>
>>> Kind regards,
>>>
>>> Adam Isaacson
>>> South African Radio Astronomy Observatory (SARAO)
>>> Hardware Manager
>>> Cell: (+27) 825639602
>>> Tel:  (+27) 215067300
>>> email: [email protected]
>>>
>>>
>>>
>>> On Thu, Jan 28, 2021 at 12:09 AM David MacMahon <[email protected]> wrote:
>>>>
>>>> Wow, thanks for these truly awesome forensics, Adam!  It sounds like you 
>>>> went down a rabbit hole and lived to tell the tale.  I'm sure many of us 
>>>> will benefit from these details.
>>>>
>>>> Sorry if this is a FAQ, but what are the prospects for moving the tool 
>>>> flow beyond Ubuntu 16.04?  That release is really starting to show its 
>>>> age, especially since its stock Python3 is only 3.5.  (Though to be fair, 
>>>> Python is at least partly to blame due to its poor track record on version 
>>>> compatibility.  :P)
>>>>
>>>> Cheers,
>>>> Dave
>>>>
>>>> On Jan 27, 2021, at 13:00, Adam Isaacson <[email protected]> wrote:
>>>>
>>>> Hi Kaj,
>>>>
>>>> I am including the CASPER community in this email thread as it applies to 
>>>> everyone.
>>>>
>>>> Interesting, so I have run into another person with the same virtualenv 
>>>> install issue that you encountered as shown in red below. I have been 
>>>> helping him debug too on a new machine and I am pleased to say that his 
>>>> virtualenv is now working. It seems like the new Ubuntu 16.04LTS installs 
>>>> come with a newer version of virtualenv which is not compatible with 
>>>> python 3.5 - fun, fun, fun. This definitely applies to all Casperites who 
>>>> are installing the toolflow on their new machines.
>>>>
>>>> kjwiik@casperx:~/work$ virtualenv -p python3 casper_venv
>>>> Traceback (most recent call last):
>>>>    File "/usr/local/bin/virtualenv", line 7, in <module>
>>>>      from virtualenv.__main__ import run_with_catch
>>>>    File 
>>>> "/home/kjwiik/.local/lib/python3.5/site-packages/virtualenv/__init__.py", 
>>>> line 3, in <module>
>>>>      from .run import cli_run, session_via_cli
>>>>    File 
>>>> "/home/kjwiik/.local/lib/python3.5/site-packages/virtualenv/run/__init__.py",
>>>>  line 13, in <module>
>>>>      from .plugin.activators import ActivationSelector
>>>>    File 
>>>> "/home/kjwiik/.local/lib/python3.5/site-packages/virtualenv/run/plugin/activators.py",
>>>>  line 6, in <module>
>>>>      from .base import ComponentBuilder
>>>>    File 
>>>> "/home/kjwiik/.local/lib/python3.5/site-packages/virtualenv/run/plugin/base.py",
>>>>  line 9, in <module>
>>>>      from importlib_metadata import entry_points
>>>>    File 
>>>> "/home/kjwiik/.local/lib/python3.5/site-packages/importlib_metadata/__init__.py",
>>>>  line 88
>>>>      dist: Optional['Distribution'] = None
>>>>          ^
>>>> SyntaxError: invalid syntax
>>>> kjwiik@casperx:~/work$
>>>>
>>>> I want you to check the following versions for me:
>>>>
>>>> 1) virtualenv -> type "virtualenv --version" at the prompt. You should get 
>>>> 16.7.5. If not then you will need to uninstall the virtualenv by typing: 
>>>> "pip3 uninstall virtualenv" and then we will need to install the 16.7.5 
>>>> version. To install an exact version then type: "pip3 install 
>>>> virtualenv==16.7.5". The use of "sudo" with "-H" arguments may or may not 
>>>> be needed. The installs will guide you.
>>>>
>>>> 2) What is your Ubuntu 16.04LTS version? -> type "lsb_release -a". I am 
>>>> using Ubuntu 16.04.7 LTS, Xenial.
>>>>
>>>> 3) What is your pip3 version? -> type "pip3 --version". I am using pip 
>>>> 8.1.1.
>>>>
>>>> 4) What is your python version? -> type: "python --version". I am using 
>>>> python version 2.7.12
>>>>
>>>> 5) What is your python3 version? -> type: "python3 --version". I am using 
>>>> python3 version 3.5.2.
>>>>
>>>> Please make sure all these versions are the same before continuing. I 
>>>> suspect that the latest Ubuntu 16.04LTS installs have made some upgrades 
>>>> that are incompatible.
>>>>
>>>> Once these versions are as above then try the following step to create the 
>>>> virtual env:
>>>>
>>>> 1) Type: "virtualenv -p python3 <name_of_virtual_env>". This should create 
>>>> a folder with the same name as "name_of_virtual_env". There should be no 
>>>> issues with the install. It should complete without issues.
>>>> 2) To activate the virtual environment -> type: "source 
>>>> <path_to_folder>/<name_of_virtual_env>/bin/activate
>>>> 3) Once activated then you can deactivate it by typing "deactivate".
>>>> 4) If the virtual environment is activated then if you type "python" you 
>>>> should get version 3.5.2
>>>> 5) If the virtual environment is deactivated then if you type "python" you 
>>>> should get 2.7.12.
>>>>
>>>> I think if you can achieve this then you are ready to install the toolflow 
>>>> by following these steps:
>>>>
>>>> 1) 
>>>> https://casper-toolflow.readthedocs.io/en/latest/src/Installing-the-Toolflow.html#
>>>> 2) 
>>>> https://casper-toolflow.readthedocs.io/en/latest/src/How-to-install-Matlab.html
>>>> 3) 
>>>> https://casper-toolflow.readthedocs.io/en/latest/src/How-to-install-Xilinx-Vivado.html
>>>> 4) 
>>>> https://casper-toolflow.readthedocs.io/en/latest/src/Configuring-the-Toolflow.html
>>>> 5) 
>>>> https://casper-toolflow.readthedocs.io/en/latest/src/Running-the-Toolflow.html
>>>> 6) https://casper-toolflow.readthedocs.io/projects/casperfpga/en/latest/ 
>>>> (This is how to install casperfpga)
>>>>
>>>> @Jonathon Kocz : we will need to update the docs to reflect this new 
>>>> information. I will wait until both parties have working systems before 
>>>> updating the ReadtheDocs. One of the parties is using a proxy and has some 
>>>> additional information on how to install with a proxy that will be useful 
>>>> for other casperites.
>>>>
>>>> I hope this helps!
>>>>
>>>> Kind regards,
>>>>
>>>> Adam Isaacson
>>>> South African Radio Astronomy Observatory (SARAO)
>>>> Hardware Manager
>>>> Cell: (+27) 825639602
>>>> Tel:  (+27) 215067300
>>>> email: [email protected]
>>>>
>>>>
>>>>
>>>> On Sun, Jan 24, 2021 at 8:09 PM Adam Isaacson <[email protected]> wrote:
>>>>>
>>>>> Hi Kaj,
>>>>>
>>>>> Are you running a python virtual environment using python 3.5? Once you 
>>>>> start the virtual environment and type python you should see version 
>>>>> 3.5.2 or something like that. It doesn't look like it. Here is some 
>>>>> documentation that should be helpful - make sure you follow these steps:
>>>>>
>>>>> 1) How to configure the toollflow: 
>>>>> https://casper-toolflow.readthedocs.io/en/latest/src/Configuring-the-Toolflow.html
>>>>> 2) Running the toolflow: 
>>>>> https://casper-toolflow.readthedocs.io/en/latest/src/Running-the-Toolflow.html
>>>>>
>>>>> Does your startsg.local file look like this:
>>>>>
>>>>> export XILINX_PATH=/opt/Xilinx/Vivado/2019.1
>>>>> export MATLAB_PATH=/usr/local/MATLAB/R2018a
>>>>> export PLATFORM=lin64
>>>>> export JASPER_BACKEND=vivado
>>>>>
>>>>> # over-ride the MATLAB libexpat version with the OS's one.
>>>>> # Using LD_PRELOAD=${LD_PRELOAD}:"..." rather than just LD_PRELOAD="..."
>>>>> # ensures that we preserve any other settings already configured
>>>>> export LD_PRELOAD=${LD_PRELOAD}:"/usr/lib/x86_64-linux-gnu/libexpat.so"
>>>>>
>>>>> # Activate a custom python environment on load
>>>>> export CASPER_PYTHON_VENV_ON_START=/home/user/work/casper_venv
>>>>>
>>>>>
>>>>> You must run everything from the virtual environment in order to work. 
>>>>> The last line in the startsg.local will automatically start your virtual 
>>>>> environment session, but you can also do it manually e.g. source 
>>>>> ~/venv/bin/activate will give you the following "(venv) 
>>>>> aisaacson@adam-cm:~/work/git_work/ska-sa/2019_1/mlib_devel$". The red 
>>>>> (venv) tells you that you are in the virtual python environment. Remember 
>>>>> you also need to install requirements.txt while the virtual environment 
>>>>> is running.
>>>>>
>>>>> Then all you really need to do is run "./startsg" at the prompt and it 
>>>>> should open up Matlab where you can build your slx file by typing in 
>>>>> "jasper" or "jasper_frontend. if you use "jasper_frontend" then it will 
>>>>> just compile sysgen and the simulink frontend. You can then open another 
>>>>> terminal session and under "mlib_devel" type "source startsg 
>>>>> startsg.local". This will make sure everything is in your path. You can 
>>>>> then copy and paste the exec_flow.py command from the Matlab command 
>>>>> window and then it should build the middle end and backend. Remember to 
>>>>> start the virtual environment for this terminal window as well. This 
>>>>> should all be in the above docs, but if you are still struggling then 
>>>>> please send us a step by step terminal screen capture, so we can see if 
>>>>> you are doing everything correctly, thanks.
>>>>>
>>>>> I hope this helps!
>>>>>
>>>>> Kind regards,
>>>>>
>>>>> Adam Isaacson
>>>>> South African Radio Astronomy Observatory (SARAO)
>>>>> Hardware Manager
>>>>> Cell: (+27) 825639602
>>>>> Tel:  (+27) 215067300
>>>>> email: [email protected]
>>>>>
>>>>>
>>>>>
>>>>> On Sun, Jan 24, 2021 at 7:15 PM Kaj Wiik <[email protected]> wrote:
>>>>>>
>>>>>> Hi!
>>>>>>
>>>>>> A followup...
>>>>>>
>>>>>> I was able to start (but not run, see below...) the toolflow with the
>>>>>> following modifications:
>>>>>>
>>>>>> - to run jasper_frontend, I had to install python-yaml. I tried first to
>>>>>> add python3-yaml but it seems that the toolflow is mixing python2 and
>>>>>> python3?
>>>>>>
>>>>>> - I added 'export LM_LICENSE_FILE=/opt/Xilinx/Xilinx.lic' and
>>>>>> 'export MLIB_DEVEL_PATH=~/mlib_devel' to startsg.local
>>>>>>
>>>>>> When matlab gave a command line and I run it, I got the following error
>>>>>> message that I do not (yet!) understand:
>>>>>>
>>>>>> kjwiik@casperx:~/tmp$ source ../mlib_devel/startsg.local
>>>>>> kjwiik@casperx:~/tmp$ /usr/bin/python
>>>>>> /home/kjwiik/mlib_devel/jasper_library/exec_flow.py -m
>>>>>> /home/kjwiik/mlib_devel/jasper_library/test_models/test_zcu111.slx
>>>>>> --middleware --backend --software
>>>>>> Starting compile
>>>>>> Starting Toolflow!
>>>>>> Frontend is simulink
>>>>>> Setting compile directory:
>>>>>> /home/kjwiik/mlib_devel/jasper_library/test_models/test_zcu111
>>>>>> /home/kjwiik/mlib_devel/jasper_library/platforms/zcu111.yaml
>>>>>> {'backend_target': 'vivado', 'name': 'zcu111', 'fpga':
>>>>>> 'xczu28dr-ffvg1517-2-e', 'mmbus_architecture': 'AXI4-Lite', 'sources':
>>>>>> [], 'cfgbvs': 'GND', 'provides': ['sys_clk'], 'config_voltage': 1.8,
>>>>>> 'pins': {'clk_100_p': {'loc': 'AM15', 'iostd': 'LVDS'}, 'clk_100_n':
>>>>>> {'loc': 'AN15', 'iostd': 'LVDS'}, 'led': {'loc': ['AR13', 'AP13',
>>>>>> 'AR16', 'AP16', 'AP15', 'AN16', 'AN17', 'AV15'], 'iostd': 'LVCMOS18'}},
>>>>>> 'mmbus_base_address': 2684354560, 'mmbus_address_alignment': 4,
>>>>>> 'manufacturer': 'Xilinx', 'constraints': []}
>>>>>> sw_reg
>>>>>> Traceback (most recent call last):
>>>>>>    File "/home/kjwiik/mlib_devel/jasper_library/exec_flow.py", line 197,
>>>>>> in <module>
>>>>>>      tf.gen_periph_objs()
>>>>>>    File "/home/kjwiik/mlib_devel/jasper_library/toolflow.py", line 363,
>>>>>> in gen_periph_objs
>>>>>>      self.peripherals[pk], self.plat))
>>>>>>    File
>>>>>> "/home/kjwiik/mlib_devel/jasper_library/yellow_blocks/yellow_block.py",
>>>>>> line 65, in make_block
>>>>>>      return cls(blk,platform,hdl_root=hdl_root)
>>>>>>    File
>>>>>> "/home/kjwiik/mlib_devel/jasper_library/yellow_blocks/yellow_block.py",
>>>>>> line 92, in __init__
>>>>>>      self.hdl_root = os.getenv('HDL_ROOT').rstrip('/') #: The base
>>>>>> directory from which source file's locations are specified
>>>>>> AttributeError: 'NoneType' object has no attribute 'rstrip'
>>>>>> -----------------------------------------------------------------------
>>>>>>
>>>>>> Could this be again a python version problem?
>>>>>>
>>>>>> Thanks,
>>>>>> Kaj
>>>>>>
>>>>>> On 1/22/21 6:50 PM, Kaj Wiik wrote:
>>>>>> > Hi!
>>>>>> >
>>>>>> > I tried a bit different route: I installed python3-numpy and
>>>>>> > python3-setuptools-git Ubuntu packages first and commented out numpy
>>>>>> > from requirements.txt. At least the installation went fine using these
>>>>>> > workarounds.
>>>>>> >
>>>>>> > About ZCU111 Slack channel, I am very interested (and my colleague
>>>>>> > [email protected] also), could you please send us an invitation?
>>>>>> >
>>>>>> > Many thanks for your kind help!
>>>>>> >
>>>>>> > Kaj
>>>>>> >
>>>>>> > On 1/20/21 10:22 PM, Dan Werthimer wrote:
>>>>>> >>
>>>>>> >> hi kaj,
>>>>>> >>
>>>>>> >> regarding your interest in ZCU111:
>>>>>> >> there's a casper slack channel on RFSOC that you might find useful.
>>>>>> >> wei liu recently developed a casper ADC yellow block for the ZCU111.
>>>>>> >>
>>>>>> >> best wishes,
>>>>>> >>
>>>>>> >> dan
>>>>>> >>
>>>>>> >>
>>>>>> >>
>>>>>> >> Dan Werthimer
>>>>>> >> Marilyn and Watson Alberts Chair
>>>>>> >> Astronomy Dept and Space Sciences Lab
>>>>>> >> University of California, Berkeley
>>>>>> >>
>>>>>> >>
>>>>>> >> On Wed, Jan 20, 2021 at 12:17 PM Kaj Wiik <[email protected]
>>>>>> >> <mailto:[email protected]>> wrote:
>>>>>> >>
>>>>>> >>
>>>>>> >>
>>>>>> >>     On 20/01/2021 18:49, Jack Hickish wrote:
>>>>>> >>
>>>>>> >>      > I've been using Ubuntu 18.04 LTS without issues, at least with
>>>>>> >>     the boards which use Vivado 2019. I'm not sure  what versions of
>>>>>> >>     python the OS came with, but I'm currently running the toolflow 
>>>>>> >> in a
>>>>>> >>     python 3.6.9 virtual env.
>>>>>> >>
>>>>>> >>     I first tried with Ubuntu 18.04 LTS but I got stuck with a problem
>>>>>> >>     with Matlab and some system library versions.
>>>>>> >>
>>>>>> >>     I think I'll change the requirements.txt file to read "numpy<1.19"
>>>>>> >>     and try with that first.
>>>>>> >>
>>>>>> >>     I am very interested of all information and experiences with 
>>>>>> >> Casper
>>>>>> >>     on ZCU111. Thanks to Adam for pointing out of a mlib_devel ZCU111
>>>>>> >>     branch, I haven't noticed that!
>>>>>> >>
>>>>>> >>     Thanks!
>>>>>> >>
>>>>>> >>     Kaj
>>>>>> >>
>>>>>> >>     --     You received this message because you are subscribed to the
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>>>>>> >>     Groups "[email protected]
>>>>>> >>     <mailto:[email protected]>" group.
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>>>>>> >>     send an email to [email protected]
>>>>>> >>     <mailto:casper%[email protected]>.
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>>>>>> >>
>>>>>> >> https://groups.google.com/a/lists.berkeley.edu/d/msgid/casper/020a6f84-ded9-49cc-2d4a-00a766e743be%40utu.fi.
>>>>>> >>
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>>>>>> >> <https://groups.google.com/a/lists.berkeley.edu/d/msgid/casper/CAGHS_vHQ1bTha%3DFjCe0sGddd3Gt6GrYkh8dgz_eKDWXebf87iQ%40mail.gmail.com?utm_medium=email&utm_source=footer>.
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