Hello, my name is Ryoma Sato. I am a second-year master's student at the Graduate School of Bioresources and Environmental Sciences, Kyushu University in Japan.
I have started the Oyster River Protocol, but I found a bug, so I will send you a report. Please check the following information. I would like you to tell me where is wrong. We are sorry for any inconvenience this may cause you, but we appreciate your cooperation. (orp_v2) [iceplant4561@at137 sampledata]$ ~/Oyster_River_Protocol/oyster.mk main STRAND=RF MEM=15 CPU=8 READ1=test.1.fq.gz READ2=test.2.fq.gz RUNOUT=test /bin/bash: activate: No such file or directory SALMON installed /bin/bash: activate: No such file or directory /bin/bash: activate: No such file or directory /bin/bash: activate: No such file or directory BUSCO installed /bin/bash: activate: No such file or directory /bin/bash: activate: No such file or directory SPADES installed /bin/bash: activate: No such file or directory TRINITY installed /bin/bash: activate: No such file or directory TRIMMOMATIC installed /bin/bash: activate: No such file or directory TRANSABYSS installed /bin/bash: activate: No such file or directory RCORRECTOR installed ***** Welcome to the Oyster River ***** ***** This is version 2.3.3 ***** /bin/bash: activate: No such file or directory ERROR, don't recognize parameter: --no_normalize_reads Please review usage info for accepted parameters. make: *** [/lustre7/home/iceplant4561/Oyster_River_Protocol/sampledata/assemblies/test.trinity.Trinity.fasta] Error 255 --------------------------- Kyushu University Graduate School Graduate School of Bioresource and Environmental Sciences Course of Agricultural Bioscience, Department of Bioresource Sciences Plant Production Physiology Laboratory, 2nd year master's student Ryoma Sato Mail: sato.ryoma....@s.kyushu-u.ac.jp
