I've just been puzzling over why the colouring and sorting sometimes appeared to be wrong, and discovered that this is because the output of pmccabe is sorted on its first column, modified cyclomatic complexity, but the figures actually reported by pmccabe2html are for standard cyclomatic complexity.
It seems we need to make up our mind which to use. I'd vote for modified, as the reasons given for modifying the count make sense to me. Either way, if we have a consensus, I'll happily make a patch to pmccabe2html to make the figures in the report consistent with the sorting and colouring. -- http://rrt.sc3d.org