Do you have a temperature probe?  One of those IR thermometers?
A FLIR One camera for your phone?

Then you can quickly check things like heat sink temperatures and surroundings. 
 Air temp is hard to measure quickly and accurately.

Jim Lux
(818)354-2075 (office)
(818)395-2714 (cell)

From: Beowulf [mailto:beowulf-boun...@beowulf.org] On Behalf Of Andrew Latham
Sent: Friday, September 08, 2017 11:56 AM
To: Prentice Bisbal <pbis...@pppl.gov>
Cc: Beowulf List <beowulf@beowulf.org>
Subject: Re: [Beowulf] Varying performance across identical cluster nodes.

Shooting from hip
1. BIOS identical version and settings
2. Firmware on device (I assume nothing just thinking out loud)
3. Re-seat fans/replace (oxidized contacts - silly but why not)
4. Verify the power supplies are identical (various watts etc... maybe swap out 
and test)
5. Memory cooling heat-sinks? (have seen identical orders with different memory 
some with heatsinks)
6. Thermal paste
7. Blank panels on empty drive bays
8. Location in rack/room
9. Blanking on rack

Shared to promote thought

On Fri, Sep 8, 2017 at 1:41 PM, Prentice Bisbal 
<pbis...@pppl.gov<mailto:pbis...@pppl.gov>> wrote:
Beowulfers,

I need your assistance debugging a problem:

I have a dozen servers that are all identical hardware: SuperMicro servers with 
AMD Opteron 6320 processors. Every since we upgraded to CentOS 6, the users 
have been complaining of wildly inconsistent performance across these 12 nodes. 
I ran LINPACK on these nodes, and was able to duplicate the problem, with 
performance varying from ~14 GFLOPS to 64 GFLOPS.

I've identified that performance on the slower nodes starts off fine, and then 
slowly degrades throughout the LINPACK run. For example, on a node with this 
problem, during first LINPACK test, I can see the performance drop from 115 
GFLOPS down to 11.3 GFLOPS. That constant, downward trend continues throughout 
the remaining tests. At the start of subsequent tests, performance will jump up 
to about 9-10 GFLOPS, but then drop to 5-6 GLOPS at the end of the test.

Because of the nature of this problem, I suspect this might be a thermal issue. 
My guess is that the processor speed is being throttled to prevent overheating 
on the "bad" nodes.

But here's the thing: this wasn't a problem until we upgraded to CentOS 6. 
Where I work, we use a read-only NFSroot filesystem for our cluster nodes, so 
all nodes are mounting and using the same exact read-only image of the 
operating system. This only happens with these SuperMicro nodes, and only with 
the CentOS 6 on NFSroot. RHEL5 on NFSroot worked fine, and when I installed 
CentOS 6 on a local disk, the nodes worked fine.

Any ideas where to look or what to tweak to fix this? Any idea why this is only 
occuring with RHEL 6 w/ NFS root OS?

--
Prentice

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--
- Andrew "lathama" Latham lath...@gmail.com<mailto:lath...@gmail.com> 
http://lathama.com<http://lathama.org> -
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