You should add, as the second line,
#PBS -S /bin/csh else PBS will (I think) use your default login shell, which I assume is not csh (explaining the "setenv" error message). Also, you have a typo. You should have echo "NPROCS is $NPROCS" instead of echo "NPOCS is $NPOCS" Don Holmgren Fermilab On Wed, 7 Apr 2010, akshar bhosale wrote:
Hi, we have cluser of 8 nodes and it is rhel 5.2 (64 bit). We have torque and here is my submit script which is #!/bin/csh -f #PBS -l nodes=2:ppn=2 #PBS -r n #PBS -A ourproj #PBS -V #PBS -o output_pvd3.6.txt #PBS -e error_pvd3.6.txt echo PBS JOB id is $PBS_JOBID echo PBS_NODEFILE is $PBS_NODEFILE echo PBS_QUEUE is $PBS_QUEUE setenv NPROCS `cat $PBS_NODEFILE|wc -l` echo "NPOCS is $NPOCS" #/opt/intel/mpi/bin64/mpirun --totalnum=$NPROCS --file=$PBS_NODEFILE --rsh=/usr/bin/ssh -1 --ordered --verbose -l -machinefile $PBS_NODEFILE -np $NPROCS /home/aksharb/helloworld #sleep 100 /bin/hostname cat $PBS_NODEFILE in output file i get PBS JOB id is 1725.server1.gnps.tkl PBS_NODEFILE is /opt/PBS/aux//1725.server1.gnps.tkl PBS_QUEUE is batch NPOCS is y8.gnps.tkl y8.gnps.tkl y7.gnps.tkl y7.gnps.tkl and error file says : /opt/PBS/mom_priv/jobs/1725.server1.gnps.tkl.SC: line 11: setenv: command not found kindly guide me.
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