During boot the pins have to have the default configuration, and the wired 
hardware must not influence the state of the pins.

After boot, you can configure the desired pinmuxing and connect your 
hardware.

BTW: since you're booting from EMC, you can use 6 further GPIOs on the 
SD-Card slot and 2 further on the JT header (unidirectional).

Regards

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