According to the SRM (8.2.4&5) the EEPROM of capes contains information to 
mux all of the pins needed for the cape. 

But, I have found conflicting answers for my question.

Here (and in 2013) <http://papermint-designs.com/community/node/338> it 
says that it cannot but here (and more recently) 
<http://patternagents.com/news/2015/01/29/devicetree-overlays.html>it 
implies that it can.

Can anyone point me to a more definitive answer?

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