PRUs might solve your issue.

On Thursday, 11 June 2015 02:41:31 UTC+5:30, BBBCSF wrote:
>
> I'm attempting to use two PWM pins, both of different instances, to 
> generate two signals.  My current task is to synchronize these two so that 
> one goes through a certain amount of periods while the other signal is 
> high.  Specifically, I need a 250 KHz signal to go through 256 periods 
> while a 40 Hz signal is high for 1.05 ms and low for the other 23.95 ms. 
>  However the signals don't sync up on the oscilloscope, even though 
> according to the math they should.  Do I have to just figure out by 
> plugging in different numbers until I find out which one works?  Also, is 
> there a way to make it so that the rising edge of the 250 KHz signal always 
> comes a certain amount of time after the rising edge of the 40 Hz?
>

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