References:
  <http://lists.gnu.org/archive/html/automake-patches/2011-11/msg00056.html>
  <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=9768>

On 11/22/2011 10:19 PM, Stefano Lattarini wrote:
>
> For the moment, I've pushed two changes that enhance the testsuite
> coverage w.r.t. expected remake errors in situations/setups that might
> be touched by the proposed patch.  See:
>  <http://lists.gnu.org/archive/html/automake-patches/2011-11/msg00054.html>
>  <http://lists.gnu.org/archive/html/automake-patches/2011-11/msg00055.html>
> 
> Regards,
>   Stefano
>
And I've finally applied the attached patch to fix the bug.  I'm thus closing
this bug report.

Regards,
  Stefano
>From 9f7864ba9b8a12761db67c16025c45ed95aca47e Mon Sep 17 00:00:00 2001
Message-Id: <9f7864ba9b8a12761db67c16025c45ed95aca47e.1324578021.git.stefano.lattar...@gmail.com>
From: Stefano Lattarini <stefano.lattar...@gmail.com>
Date: Sun, 16 Oct 2011 14:57:37 +0200
Subject: [PATCH] include: avoid "deleted .am file" problem

* automake.in (handle_configure): When processing `configure.am',
also expand `HAVE-MAKEFILE-IN-DEPS' to a boolean telling whether
`MAKEFILE-IN-DEPS' is empty or not.
* lib/am/configure.am [?HAVE-MAKEFILE-IN-DEPS?]
(%MAKEFILE-IN-DEPS%): New target without dependencies, to
avoid the "deleted .am file" problem.  Emit this only when
`?HAVE-MAKEFILE-IN-DEPS?' is true, to avoid generating an
"empty" dependency declaration.
* tests/deleted-am.test: Make grepping of error message stricter.
* tests/dist-missing-am.test: Likewise.
* tests/remake-deleted-am.test: New test.
* tests/remake-deleted-am-2.test: Likewise.
* tests/remake-deleted-am-subdir.test: Likewise.
* tests/remake-renamed-am.test: Likewise.
* tests/makefile-deps.test: Likewise.
* tests/Makefile.am (TESTS): Add the new tests.
* NEWS: Update.

Fixes automake bug#9768.

Report by Peter Johansson.

See also commit `Release-1-10-40-gd0ebf71', which fixed a similar
problem for .m4 files included by configure.ac.
---
 ChangeLog                           |   25 +++++++++++
 NEWS                                |    4 ++
 automake.in                         |    1 +
 lib/am/configure.am                 |    3 +
 tests/Makefile.am                   |    5 ++
 tests/deleted-am.test               |   18 +++-----
 tests/dist-missing-am.test          |    8 +--
 tests/makefile-deps.test            |   31 ++++++++++++++
 tests/remake-deleted-am-2.test      |   77 ++++++++++++++++++++++++++++++++++
 tests/remake-deleted-am-subdir.test |   79 +++++++++++++++++++++++++++++++++++
 tests/remake-deleted-am.test        |   69 ++++++++++++++++++++++++++++++
 tests/remake-renamed-am.test        |   60 ++++++++++++++++++++++++++
 12 files changed, 363 insertions(+), 17 deletions(-)
 create mode 100755 tests/makefile-deps.test
 create mode 100755 tests/remake-deleted-am-2.test
 create mode 100755 tests/remake-deleted-am-subdir.test
 create mode 100755 tests/remake-deleted-am.test
 create mode 100755 tests/remake-renamed-am.test

diff --git a/ChangeLog b/ChangeLog
index d97d461..d630aef 100644
--- a/ChangeLog
+++ b/ChangeLog
@@ -1,3 +1,28 @@
+2011-12-22  Stefano Lattarini  <stefano.lattar...@gmail.com>
+
+	include: avoid "deleted .am file" problem
+	* automake.in (handle_configure): When processing `configure.am',
+	also expand `HAVE-MAKEFILE-IN-DEPS' to a boolean telling whether
+	`MAKEFILE-IN-DEPS' is empty or not.
+	* lib/am/configure.am [?HAVE-MAKEFILE-IN-DEPS?]
+	(%MAKEFILE-IN-DEPS%): New target without dependencies, to
+	avoid the "deleted .am file" problem.  Emit this only when
+	`?HAVE-MAKEFILE-IN-DEPS?' is true, to avoid generating an
+	"empty" dependency declaration.
+	* tests/deleted-am.test: Make grepping of error message stricter.
+	* tests/dist-missing-am.test: Likewise.
+	* tests/remake-deleted-am.test: New test.
+	* tests/remake-deleted-am-2.test: Likewise.
+	* tests/remake-deleted-am-subdir.test: Likewise.
+	* tests/remake-renamed-am.test: Likewise.
+	* tests/makefile-deps.test: Likewise.
+	* tests/Makefile.am (TESTS): Add the new tests.
+	* NEWS: Update.
+	Fixes automake bug#9768.
+	Report by Peter Johansson.
+	See also commit `Release-1-10-40-gd0ebf71', which fixed a similar
+	problem for .m4 files included by configure.ac.
+
 2011-12-14  Stefano Lattarini  <stefano.lattar...@gmail.com>
 
 	tests: better handling of gettext and libtool requirements
diff --git a/NEWS b/NEWS
index 785d6b0..ec4ab40 100644
--- a/NEWS
+++ b/NEWS
@@ -82,6 +82,10 @@ Bugs fixed in 1.11.0a:
 
 * Long-standing bugs:
 
+  - The "deleted header file problem" for *.am files is avoided by stub
+    rules.  This allows `make' to trigger a rerun of `automake' also if
+    some previously needed `.am' file has been removed.
+
   - "make distcheck" now correctly complains also when "make uninstall"
     leaves one and only one file installed in $(prefix).
 
diff --git a/automake.in b/automake.in
index db7f3c6..309eade 100644
--- a/automake.in
+++ b/automake.in
@@ -4249,6 +4249,7 @@ sub handle_configure ($$$@)
      'MAKEFILE-DEPS'       => "@rewritten",
      'CONFIG-MAKEFILE'     => ($relative_dir eq '.') ? '$@' : '$(subdir)/$@',
      'MAKEFILE-IN'         => $rel_makefile_in,
+     'HAVE-MAKEFILE-IN-DEPS' => (@include_stack > 0),
      'MAKEFILE-IN-DEPS'    => "@include_stack",
      'MAKEFILE-AM'         => $rel_makefile_am,
      'AUTOMAKE-OPTIONS'    => $automake_options,
diff --git a/lib/am/configure.am b/lib/am/configure.am
index 594ec67..cadb27c 100644
--- a/lib/am/configure.am
+++ b/lib/am/configure.am
@@ -83,6 +83,9 @@ endif %?TOPDIR_P%
 	    cd $(top_builddir) && $(SHELL) ./config.status %CONFIG-MAKEFILE% $(am__depfiles_maybe);; \
 	esac;
 
+## Avoid the "deleted header file" problem for the dependencies.
+?HAVE-MAKEFILE-IN-DEPS?%MAKEFILE-IN-DEPS%:
+
 DIST_COMMON += %MAKEFILE-AM%
 
 
diff --git a/tests/Makefile.am b/tests/Makefile.am
index b2a61ec..7097ff7 100644
--- a/tests/Makefile.am
+++ b/tests/Makefile.am
@@ -555,6 +555,7 @@ maintclean.test \
 maintclean-vpath.test \
 maintmode-configure-msg.test \
 make.test \
+makefile-deps.test \
 makej.test \
 makej2.test \
 maken.test \
@@ -730,6 +731,10 @@ remake-subdir2.test \
 remake-subdir-long-time.test \
 remake-am-pr10111.test \
 remake-m4-pr10111.test \
+remake-deleted-am.test \
+remake-deleted-am-2.test \
+remake-deleted-am-subdir.test \
+remake-renamed-am.test \
 pr8365-remake-timing.test \
 regex.test \
 req.test \
diff --git a/tests/deleted-am.test b/tests/deleted-am.test
index cc82e79..fa41e9e 100755
--- a/tests/deleted-am.test
+++ b/tests/deleted-am.test
@@ -39,12 +39,9 @@ $MAKE
 rm -f zardoz.am
 $MAKE >output 2>&1 && { cat output; Exit 1; }
 cat output
-# FIXME: enable this stricter grepping, once bug#9768 has been taken
-# FIXME: care of.
-## This error will come from automake, not make, so we can be stricter
-## in our grepping of it.
-# grep 'cannot open.*zardoz\.am' output
-grep 'zardoz\.am' output
+# This error will come from automake, not make, so we can be stricter
+# in our grepping of it.
+grep 'cannot open.*zardoz\.am' output
 grep 'foobar\.am' output && Exit 1 # No spurious error, please.
 
 # Try  with one less indirection.
@@ -55,11 +52,8 @@ $MAKE # Sanity check.
 rm -f foobar.am
 $MAKE >output 2>&1 && { cat output; Exit 1; }
 cat output
-# FIXME: enable this stricter grepping, once bug#9768 has been taken
-# FIXME: care of.
-## This error will come from automake, not make, so we can be stricter
-## in our grepping of it.
-# grep 'cannot open.*foobar\.am' output
-grep 'foobar\.am' output
+# This error will come from automake, not make, so we can be stricter
+# in our grepping of it.
+grep 'cannot open.*foobar\.am' output
 
 :
diff --git a/tests/dist-missing-am.test b/tests/dist-missing-am.test
index 49e82aa..bb404bc 100755
--- a/tests/dist-missing-am.test
+++ b/tests/dist-missing-am.test
@@ -58,11 +58,9 @@ for vpath in false :; do
   fi
   $MAKE >output 2>&1 && { cat output; Exit 1; }
   cat output
-# FIXME: enable this stricter grepping, once bug#9768 has been taken
-# FIXME: care of.
-#  # This error comes from automake, not make, so we can be stricter
-#  # in our grepping of it.
-#  grep 'cannot open.*zardoz\.am' output
+  # This error comes from automake, not make, so we can be stricter
+  # in our grepping of it.
+  grep 'cannot open.*zardoz\.am' output
   grep 'foobar\.am' output && Exit 1 # No spurious error, please.
   cd "$ocwd" || fatal_ "cannot chdir back to top-level test directory"
 done
diff --git a/tests/makefile-deps.test b/tests/makefile-deps.test
new file mode 100755
index 0000000..819c7d3
--- /dev/null
+++ b/tests/makefile-deps.test
@@ -0,0 +1,31 @@
+#! /bin/sh
+# Copyright (C) 2011 Free Software Foundation, Inc.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2, or (at your option)
+# any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+# Make sure we don't emit a rule with empty target if list of
+# automatically-computed dependencies for Makefile.in is empty.
+
+. ./defs || Exit 1
+
+set -e
+
+: > Makefile.am
+
+$ACLOCAL
+$AUTOMAKE
+
+grep "^ *:" Makefile.in && Exit 1
+
+:
diff --git a/tests/remake-deleted-am-2.test b/tests/remake-deleted-am-2.test
new file mode 100755
index 0000000..07142f6
--- /dev/null
+++ b/tests/remake-deleted-am-2.test
@@ -0,0 +1,77 @@
+#! /bin/sh
+# Copyright (C) 2011 Free Software Foundation, Inc.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2, or (at your option)
+# any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+# Check that inclusion of `.am' fragments by automake does not suffer
+# of the "deleted header problem".  This test checks deeper inclusion
+# stacks, and use VPATH builds.
+
+. ./defs || Exit 1
+
+set -e
+
+echo AC_OUTPUT >> configure.in
+
+$ACLOCAL
+$AUTOCONF
+
+cat > Makefile.am <<'END'
+include $(srcdir)/foo.am
+END
+
+cat > foo.am <<'END'
+# this is foo
+include sub/bar.am
+include baz.am
+END
+
+mkdir sub
+echo 'include $(top_srcdir)/sub/zardoz.am' > sub/bar.am
+echo '# this is zardoz' > sub/zardoz.am
+
+echo 'include fnord.am' > baz.am
+echo '# you are not seeing this' > fnord.am
+
+$AUTOMAKE
+# Sanity checks.
+$FGREP 'this is zardoz' Makefile.in
+$FGREP 'you are not seeing this' Makefile.in
+
+mkdir build
+cd build
+
+srcdir=..
+
+$srcdir/configure
+$MAKE
+
+$sleep
+echo '# this is baz' > $srcdir/baz.am
+rm -f $srcdir/fnord.am
+$MAKE
+# Sanity checks.
+$FGREP 'you are not seeing this' $srcdir/Makefile.in Makefile && Exit 1
+$FGREP 'this is baz' $srcdir/Makefile.in
+$FGREP 'this is baz' Makefile
+
+$sleep
+rm -rf $srcdir/sub $srcdir/foo.am $srcdir/baz.am
+echo '# no more inclusions' > $srcdir/Makefile.am
+$MAKE
+# Sanity checks.
+$EGREP 'this is (foo|bar|baz)' Makefile $srcdir/Makefile.in && Exit 1
+$FGREP 'no more inclusions' Makefile
+
+:
diff --git a/tests/remake-deleted-am-subdir.test b/tests/remake-deleted-am-subdir.test
new file mode 100755
index 0000000..9ed1078
--- /dev/null
+++ b/tests/remake-deleted-am-subdir.test
@@ -0,0 +1,79 @@
+#! /bin/sh
+# Copyright (C) 2011 Free Software Foundation, Inc.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2, or (at your option)
+# any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+# Check that inclusion of `.am' fragments by automake does not suffer
+# of the "deleted header problem".  This test does the check when the
+# SUBDIRS variable is involved.
+
+. ./defs || Exit 1
+
+set -e
+
+cat >> configure.in <<'END'
+AC_CONFIG_FILES([sub1/Makefile sub2/Makefile])
+AC_OUTPUT
+END
+
+$ACLOCAL
+$AUTOCONF
+
+cat > Makefile.am <<'END'
+include foo.am
+SUBDIRS = sub1 sub2
+END
+
+echo '# this is foo.am' > foo.am
+
+mkdir sub1 sub2
+
+echo 'include $(srcdir)/bar.am' > sub1/Makefile.am
+echo '# this is bar.am' > sub1/bar.am
+
+echo 'include $(top_srcdir)/foo.am' > sub2/Makefile.am
+
+$AUTOMAKE
+# Sanity checks.
+$FGREP 'this is foo.am' Makefile.in
+$FGREP 'this is bar.am' sub1/Makefile.in
+$FGREP 'this is foo.am' sub2/Makefile.in
+
+./configure
+$MAKE # Should be no-op.
+
+$sleep
+echo '# this is sub1/Makefile.am' > sub1/Makefile.am
+rm -f sub1/bar.am
+$MAKE all
+# Sanity checks.
+$FGREP 'this is bar' sub1/Makefile.in sub1/Makefile && Exit 1
+$FGREP 'this is sub1/Makefile.am' sub1/Makefile.in
+$FGREP 'this is sub1/Makefile.am' sub1/Makefile
+
+$sleep
+for d in . sub2; do
+  sed "s|.*include.*foo\.am.*|# this is $d/Makefile.am|" $d/Makefile.am > t
+  mv -f t $d/Makefile.am
+done
+rm -f foo.am
+$MAKE all
+# Sanity checks.
+$FGREP 'this is foo' sub*/Makefile* Makefile* && Exit 1
+for d in . sub1 sub2; do
+  $FGREP "this is $d/Makefile.am" $d/Makefile.in
+  $FGREP "this is $d/Makefile.am" $d/Makefile
+done
+
+:
diff --git a/tests/remake-deleted-am.test b/tests/remake-deleted-am.test
new file mode 100755
index 0000000..fa5a672
--- /dev/null
+++ b/tests/remake-deleted-am.test
@@ -0,0 +1,69 @@
+#! /bin/sh
+# Copyright (C) 2011 Free Software Foundation, Inc.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2, or (at your option)
+# any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+# Check that inclusion of `.am' fragments by automake does not suffer
+# of the "deleted header problem".  Basic checks are done here.
+
+. ./defs || Exit 1
+
+set -e
+
+echo AC_OUTPUT >> configure.in
+
+$ACLOCAL
+$AUTOCONF
+
+cat > Makefile.am <<'END'
+include foo.am
+include $(srcdir)/bar.am
+include $(top_srcdir)/baz.am
+END
+
+echo '# this is foo' > foo.am
+echo '# this is bar' > bar.am
+echo '# this is baz' > baz.am
+
+$AUTOMAKE
+# Sanity checks.
+$FGREP 'this is foo' Makefile.in
+$FGREP 'this is bar' Makefile.in
+$FGREP 'this is baz' Makefile.in
+
+./configure
+$MAKE # Should be no-op.
+
+$sleep
+sed '/^include foo\.am$/d' Makefile.am > t
+mv -f t Makefile.am
+rm -f foo.am
+$MAKE Makefile
+# Sanity checks.
+$FGREP 'this is foo' Makefile.in Makefile && Exit 1
+$FGREP 'this is bar' Makefile.in
+$FGREP 'this is bar' Makefile
+$FGREP 'this is baz' Makefile.in
+$FGREP 'this is baz' Makefile
+
+$sleep
+echo '# empty empty' > Makefile.am
+rm -f bar.am baz.am
+$MAKE Makefile
+# Sanity checks.
+$FGREP 'empty empty' Makefile.in
+$FGREP 'empty empty' Makefile
+grep 'this is ba[rz]' Makefile Makefile.in && Exit 1
+
+:
diff --git a/tests/remake-renamed-am.test b/tests/remake-renamed-am.test
new file mode 100755
index 0000000..b3a7a41
--- /dev/null
+++ b/tests/remake-renamed-am.test
@@ -0,0 +1,60 @@
+#! /bin/sh
+# Copyright (C) 2011 Free Software Foundation, Inc.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2, or (at your option)
+# any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+# Check that inclusion of `.am' fragments by automake does not suffer
+# of the "deleted header problem".  This test checks that we can rename
+# an included .am file without confusing the remake rules.
+
+. ./defs || Exit 1
+
+set -e
+
+echo AC_OUTPUT >> configure.in
+
+cat > Makefile.am <<'END'
+include foo.am
+END
+
+cat > foo.am <<'END'
+all-local:
+	echo ok > has-run-1
+END
+
+$ACLOCAL
+$AUTOMAKE
+$AUTOCONF
+
+./configure
+$MAKE
+test -f has-run-1
+
+$sleep
+rm -f has-run-1
+mv -f foo.am bar.am
+echo include bar.am > Makefile.am
+$MAKE Makefile
+$FGREP 'foo.am' Makefile Makefile.in && Exit 1
+
+$sleep
+rm -f has-run-1 bar.am
+echo 'all-local:; echo ok > has-run-2' > zardoz.am
+echo 'include $(srcdir)/zardoz.am' > Makefile.am
+using_gmake || $MAKE Makefile
+$MAKE
+test ! -f has-run-1
+test -f has-run-2
+
+:
-- 
1.7.7.3

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